XLOC_037732


Basic Information

Item Value
gene id XLOC_037732
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 18908203 ~ 18911715 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075330
AATAGCTTGAAGAAACAGACGCAATCCCTGCAGCAGAGACAAACTTATGAGATCACTGACCAAATTACAGTACAATACAATGATATATCAAGACAGCATACAAGCATTAAATCCTGGATGAATACAAGCTGTGGCACACAAAGCAGAAAATAATAATGTATCGTAAAGGATTGTAAGGCTGTAAACCATAAATCCAGATGGCATGGGCTGATCCAGCTATCTGATGATAACAGTGGAGGGCCGAAatgctggagaaaaaaaaaaaaaaatagtatgaaGGTGGTGATGGAATAAGATTCACACCTACAGCACCTACCACACATGACTTTCACACTTGAGAGCGAGCTGGGAGAGAAAGCCCAGATGAACACAAATGTACATGTGTGGTTTTTGGTGTGTAATCGTGCATTAATGTTGTCATCTAATGCTCTCTACtatgatttatttttctattacatAATAAATATCCACCAGAGCACCCGAACCATGAATGCTGCAGTTTTGTAGGTTTTTCTTTTATTCCCcaattaataatgtttaatgcCTGCAGTTTAATTGCATCTGGGTAatgtttatatgcatttatgaagcCATTTTATGAACACTGTTAAgttgtggttgttgttttttttctctgagaCTGACATTTATAAAGTAGGGGGAAAAggatacattttataatgttgtaTTAGTTCAAATAAGCTTAATAAAACCTAAAAGTGGCACTGTTtcagggtatctgcagggtcttaaacgACTTAATGTCTTTAATTTCAGAAACACAATTTTAGGCCTTAGTCCTAAATTAAGTGCAGTATTGTGTTGtgtgtcttaaatcattttaaaccggTCTTAATATTCCTCTGGCCACGTAAAGCTACCCAATGGAGCTGATATCCATCCAAtctaccaacaatccatcttaataaaatcagggaaagaaaacgtAAAACAATTACAGTTACTCGTGATAAtagcaatttaatatttaacattattattaatacaaaaactattagTAGTAGAGTagacatttttatataaacatgaaACAAGTTTTCATAACAGAATTGTATTATGTTAAAGATGTTCTACTccatcaatttggaccaaaattcAACAAAAGCATATTTTTGATTATGTAATTGCTTCTGCAACAAATGTACTTATAACAATGGTAAACttgtcatttaaaagaaaaaacattttaaaaaatggtgtAGACCGCTAGTTTTCTTGCATTGAGACAAACTGTTG
>TCONS_00075331
TGAGTCTCAGCCTTTCTCGAAGAATAGCTTGAAGAAACAGACGCAATCCCTGCAGCAGAGACAAACTTATGAGATCACTGACCAAATTACAGTACAATACAATGATATATCAAGACAGCATACAAGATGTGCCACAGGAGTGTGGACGTGGGCCGGTTGCTCTCTGCGGGGTCTGTACATCTGTGGAGAGCATAGGAAAGATGCCCATTAAATGAGAGTGCGTTTAACATTCAGAAGGCGGCTGTTACCTGTCCATCAGGCTGTAAACCATAAATCCAGATGGCATGGGCTGATCCAGCTATCTGATGATAACAGTGGAGGGCCGAAatgctggagaaaaaaaaaaaaaaatagtatgaaGGTGGTGATGGAATAAGATTCACACCTACAGCACCTACCACACATGACTTTCACACTTGAGAGCGAGCTGGGAGAGAAAGCCCAGATGAACACAAATGTACATGTGTGGTTTTTGGTGTGTAATCGTGCATTAATGTTGTCATCTAATGCTCTCTACtatgatttatttttctattacatAATAAATATCCACCAGAGCACCCGAACCATGAATGCTGCAGTTTTGTAGGTTTTTCTTTTATTCCCcaattaataatgtttaatgcCTGCAGTTTAATTGCATCTGGGTAatgtttatatgcatttatgaagcCATTTTATGAACACTGTTAAgttgtggttgttgttttttttctctgagaCTGACATTTATAAAGTAGGGGGAAAAggatacattttataatgttgtaTTAGTTCAAATAAGCTTAATAAAACCTAAAAGTGGCACTGTTtcagggtatctgcagggtcttaaacgACTTAATGTCTTTAATTTCAGAAACACAATTTTAGGCCTTAGTCCTAAATTAAGTGCAGTATTGTGTTGtgtgtcttaaatcattttaaaccggTCTTAATATTCCTCTGGCCACGTAAAGCTACCCAATGGAGCTGATATCCATCCAAtctaccaacaatccatcttaataaaatcagggaaagaaaacgtAAAACAATTACAGTTACTCGTGATAAtagcaatttaatatttaacattattattaatacaaaaactattagTAGTAGAGTagacatttttatataaacatgaaACAAGTTTTCATAACAGAATTGTATTATGTTAAAGATGTTCTACTccatcaatttggaccaaaattcAACAAAAGCATATTTTTGATTATGTAATTGCTTCTGCAACAAATGTACTTATAACAATGGTAAACttgtcatttaaaagaaaaaacattttaaaaaatggtgtAGACCGCTAGTTTTCTTGCATTGAGACAAACTGTTG
>TCONS_00074084
GTTGTTTGTCTCCTGTAGAGGGCGCGCGTGCCCACTGGATGGGCGGAGAGTGTTGCGTGATGCGTTTCCTGCTGCTTTTAAACCCGAGCAGAGTGAGTCTCAGCCTTTCTCGAAGAATAGCTTGAAGAAACAGACGCAATCCCTGCAGCAGAGACAAACTTATGAGATCACTGACCAAATTACAGTACAATACAATGATATATCAAGACAGCATACAAGATGTGCCACAGGAGTGTGGACGTGGGCCGGTTGCTCTCTGCGGGGTCTGTACATCTGTGGAGAGCATAGGAAAGATGCCCATTAAATGAGAGTGCGTTTAACATTCAGAAGGCGGCTGTTACCTGTCCATCAGCATTAAATCCTGGATGAATACAAGCTGTGGCACACAAAGCAGAAAATAATAATGTATCGTAAAGGATTGTAAGGCTGTAAACCATAAATCCAGATGGCATGGGCTGATCCAGCTATCTGATGATAACAGTGGAGGGCCGAAatgctggagaaaaaaaaaaaaaaatagtatgaaGGTGGTGATGGAATAAGATTCACACCTACAGCACCTACCACACATGACTTTCACACTTGAGAGCGAGCTGGGAGAGAAAGCCCAGATGAACACAAATGTACATGTGTGGTTTTTGGTGTGTAATCGTGCATTAATGTTGTCATCTAATGCTCTCTACtatgatttatttttctattacatAATAAATATCCACCAGAGCACCCGAACCATGAATGCTGCAGTTTTGTAGGTTTTTCTTTTATTCCCcaattaataatgtttaatgcCTGCAGTTTAATTGCATCTGGGTAatgtttatatgcatttatgaagcCATTTTATGAACACTGTTAAgttgtggttgttgttttttttctctgagaCTGACATTTATAAAGTAGGGGGAAAAggatacattttataatgttgtaTTAGTTCAAATAAGCTTAATAAAACCTAAAAGTGGCACTGTTtcagggtatctgcagggtcttaaacgACTTAATGTCTTTAATTTCAGAAACACAATTTTAGGCCTTAGTCCTAAATTAAGTGCAGTATTGTGTTGtgtgtcttaaatcattttaaaccggTCTTAATATTCCTCTGGCCACGTAAAGCTACCCAATGGAGCTGATATCCATCCAAtctaccaacaatccatcttaataaaatcagggaaagaaaacgtAAAACAATTACAGTTACTCGTGATAAtagcaatttaatatttaacattattattaatacaaaaactattagTAGTAGAGTagacatttttatataaacatgaaACAAGTTTTCATAACAGAATTGTATTATGTTAAAGATGTTCTACTccatcaatttggaccaaaattcAACAAAAGCATATTTTTGATTATGTAATTGCTTCTGCAACAAATGTACTTATAACAATGGTAAACttgtcatttaaaagaaaaaacattttaaaaaatggtgtAGACCGCTAGTTTTCTTGCATTGAGACAAACTGTTG
>TCONS_00074085
TCTCGAAGAATAGCTTGAAGAAACAGACGCAATCCCTGCAGCAGAGACAAACTTATGAGATCACTGACCAAATTACAGTACAATACAATGATATATCAAGACAGCATACAAGATGTGCCACAGGAGTGTGGACGTGGGCCGGTTGCTCTCTGCGGGGTCTGTACATCTGTGGAGAGCATAGGAAAGATGCCCATTAAATGAGAGTGCGTTTAACATTCAGAAGGCGGCTGTTACCTGTCCATCAGGTACTGCATTAGCATATGAGTGCTCGCTATGTCAAGAGCCCTTCTGCCTCATGAATATGCATTTATGGTTGATATTATACCTATCGGTTTACATGTTGGTGAATGAGATTAATGCTGTTTTTATCTCCTTTGGTTTATAGCATTAAATCCTGGATGAATACAAGCTGTGGCACACAAAGCAGAAAATAATAATGTATCGTAAAGGATTGTAAGGTATGATGCTTGCGACTATCTTAAATGTGCATTTATTGCAAATAGTTTAGCAACAAGTGAATGTCAAGCTGATGTGCAATGATGACTAAAAATTGCTGAGGTCACGACCAGTGAAAGTACATAATCGCATGTATTACCTGAGCACAT

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006364 rRNA processing biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0070013 intracellular organelle lumen cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-081104-383 No description available

Ensembl:

ensembl_id ENSDARG00000092033

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075330 False 1257 lncRNA 0.33 3 18908203 18911600
TCONS_00075331 False 1339 lncRNA 0.36 3 18908203 18911622
TCONS_00074084 False 1505 lncRNA 0.37 4 18908203 18911715
TCONS_00074085 True 605 mRNA 0.40 2 18909360 18911608

Neighbor

gene id symbol gene type direction distance location
XLOC_037731 kctd4 coding downstream 30606 18876036 ~ 18877597 (-)
XLOC_037730 tsc22d1 coding downstream 93466 18732505 ~ 18814737 (-)
XLOC_037729 NA coding downstream 183747 18720676 ~ 18724456 (-)
XLOC_037728 NA coding downstream 331010 18572373 ~ 18577193 (-)
XLOC_037727 enox1 coding downstream 339276 18310228 ~ 18568927 (-)
XLOC_037733 vgll3 coding upstream 96244 19007959 ~ 19016295 (-)
XLOC_037734 NA coding upstream 115437 19027152 ~ 19041027 (-)
XLOC_037735 CR361551.3 coding upstream 117638 19029353 ~ 19029467 (-)
XLOC_037736 CR361551.2 coding upstream 140659 19052374 ~ 19069164 (-)
XLOC_037737 crfb2 coding upstream 161841 19073556 ~ 19092322 (-)
XLOC_037725 NA non-coding downstream 969898 17919120 ~ 17938305 (-)
XLOC_037719 CT573248.1 non-coding downstream 2084028 16823285 ~ 16824175 (-)
XLOC_037718 NA non-coding downstream 2130355 16776187 ~ 16777848 (-)
XLOC_037740 AL935292.1 non-coding upstream 436409 19348124 ~ 19348239 (-)
XLOC_037741 NA non-coding upstream 509531 19421246 ~ 19421872 (-)
XLOC_037742 FP017279.1 non-coding upstream 557054 19468769 ~ 19471475 (-)

Expression


Co-expression Network