XLOC_037733 (vgll3)


Basic Information

Item Value
gene id XLOC_037733
gene name vgll3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19007959 ~ 19016295 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074086
TTTTTACTTACTTTCAGTGTTATTATGGTTataaaaaacctggaaaagtcatggaattttgacatggcattttcctgGCCTGAAAAcattttggaaaaacaaaaaaaaaccaaaaTCTGTGTACTTGAGTATAGGTTGGTTGTCTTGACTTCTATTTTGTCCTTGGTCAATCTCTGAAAATATTAGTGCGGTGTCAGTATTATCTAAATAAattgtacataaatataaatataaattgaaactaaagAGATTGCTACGTGATTTTTATATGCTGTGATATGCTGTgataaatttgaacatgcattgtttttgtttttttaccagcatatgtagacattgcatgaaacattaggtcatgaaaactTTCTTGAAAGTTTTGGAaatgtcatggaattttagttgtAAAAATGTGCATGAACCCTGTACTATGCAATCTTCACACACTTACTTTAGTAAATTTGATGACTTTGTtactttaaaatgtgtaaaacaatTACAATGCTCTGACGAGTAGACTGCTTTATTCTCTTAAAGCTATTATGTTATCAAACTCTGCTTGCTGATATTCGATACAGAATTCTTCAGATTCCTAGCTGTGAATTACAACTGGCTGTGTTTATACAGTCTCATACAGAAATCTTCATGGGCGTAAATCCACGTAAATACCGCTGACTTGCCAAGTGTGGGCATTGGGCCATCAGTTCAGAGACAATCCTCAACAGTCTATTTTGGTCCGGCACCAGGTGGTTAATGTGTGCGTAGCAGCCTTTAACCCCTGACCTTCACAATTAAGGTTCTCTGTGTCTTTCAGCAGAAGAAGTTCAGCGTCTTCAGCAGGATGCAGGATTCAGAGGAGTTTCCCTCGCACTGCGGCCAGAATAAGCAGCCCGGAGCTCTGAAGTCCCGCTCTGAGCCTGAGCTTCTGCCAGAGGAGGAGCAGAGCAGTGGGGAAGAGGATCGCTGTAAGGATACACTACAGCCCGCCGACGCCGAGTACTTGAGTGCCAGGTGTGTGGTCTTCACCTATTTTCGTGGAGACATCGGGGATGTGGTGGACGAGCATTTCTCACGCGCTTTGAGCCAGAACAGTGCCTTTAGCAATGACACCAAGGCCAGCAGACTTAACCCTGGAGGACCATGGAAAGAAGGAAACTCCCACTCGGAGGGTCAGACTAGCTCTTTACCTTCATCTCTATGGGGCAGTGGTTACCCGTCCCAGAGCAGCCCTTGTGTCCCATCGTCTCACCACGACTTCCCCCCCAGCGCCGCTTTTCACCCCGCAGACAATGGCATCTGGAGCAGCCACAGCCTCGCTCCTCCTCCTTCTGCTCTCACAGACTCCTGGCACTACAGCCTAGGACCACAGAGTGGAGCAGGATATCCTCACGTCCATGAGATGTACCCTCACATGCACCCACGGCACCCACATCCACACGCTCATCACGTGCTCCATCATGCCCACAGCCCTGCTTTGGACCCCCGCTTCAACCCGCTTCTGTTACCAGGCGTAAGGGCGTCCTGCAGTCCAACATCCTGCACCGATACAATAAAAACAGAGCTGGAGCCCAGCAGTATCCCGACACCGAGCTGGCCTGCTTCTTTCCATGGGTCAGTGGACATCTACGATACAGCTTTGGAGCAGGACAAAGCGAAGGCCAGCGTTTGGTTCTGA
>TCONS_00074087
GAAACTCCTGTAACTTTCGCTCGCACTCCGCGCCCGTGGCTCTGTTTTGATGCGCTGCCTGTCTGTAGGTGGTGAAGCCTCGTTTGGTGacacttttgtttttatgttaatattttcttttacaaACCGCGGCGCTTTTGTCTACGCGCAGGTTTATATAGCCAGGGGAAGGAATGATGACGGCGTTTATCAGCGGTTGAGGAAGCTGTATCTGAAGAGCCACTTGAGATCGCCTATAAGCCTCTGCCATGAGTTGTTTGGATGTTATGTATCATCATCAGAGTTATGGAGCTCATCACTATCTGCCCTCGACATcagcggcggcggcggcgtacaAAGCGGCGTAtttacaccatcaccaccagcagcagcagcagcagCAGAAGAAGTTCAGCGTCTTCAGCAGGATGCAGGATTCAGAGGAGTTTCCCTCGCACTGCGGCCAGAATAAGCAGCCCGGAGCTCTGAAGTCCCGCTCTGAGCCTGAGCTTCTGCCAGAGGAGGAGCAGAGCAGTGGGGAAGAGGATCGCTGTAAGGATACACTACAGCCCGCCGACGCCGAGTACTTGAGTGCCAGGTGTGTGGTCTTCACCTATTTTCGTGGAGACATCGGGGATGTGGTGGACGAGCATTTCTCACGCGCTTTGAGCCAGAACAGTGCCTTTAGCAATGACACCAAGGCCAGCAGACTTAACCCTGGAGGACCATGGAAAGAAGGAAACTCCCACTCGGAGGGTCAGACTAGCTCTTTACCTTCATCTCTATGGGGCAGTGGTTACCCGTCCCAGAGCAGCCCTTGTGTCCCATCGTCTCACCACGACTTCCCCCCCAGCGCCGCTTTTCACCCCGCAGACAATGGCATCTGGAGCAGCCACAGCCTCGCTCCTCCTCCTTCTGCTCTCACAGACTCCTGGCACTACAGCCTAGGACCACAGAGTGGAGCAGGATATCCTCACGTCCATGAGATGTACCCTCACATGCACCCACGGCACCCACATCCACACGCTCATCACGTGCTCCATCATGCCCACAGCCCTGCTTTGGACCCCCGCTTCAACCCGCTTCTGTTACCAGGCGTAAGGGCGTCCTGCAGTCCAACATCCTGCACCGATACAATAAAAACAGAGCTGGAGCCCAGCAGTATCCCGACACCGAGCTGGCCTGCTTCTTTCCATGGGTCAGTGGACATCTACGATACAGCTTTGGAGCAGGACAAAGCGAAGGCCAGCGTTTGGTTCTGA
>TCONS_00074088
TTTTTACTTACTTTCAGTGTTATTATGGTTataaaaaacctggaaaagtcatggaattttgacatggcattttcctgGCCTGAAAAcattttggaaaaacaaaaaaaaaccaaaaTCTGTGTACTTGAGTATAGGTTGGTTGTCTTGACTTCTATTTTGTCCTTGGTCAATCTCTGAAAATATTAGTGCGGTGTCAGTATTATCTAAATAAattgtacataaatataaatataaattgaaactaaagAGATTGCTACGTGATTTTTATATGCTGTGATATGCTGTgataaatttgaacatgcattgtttttgtttttttaccagcatatgtagacattgcatgaaacattaggtcatgaaaactTTCTTGAAAGTTTTGGAaatgtcatggaattttagttgtAAAAATGTGCATGAACCCTGTACTATGCAATCTTCACACACTTACTTTAGTAAATTTGATGACTTTGTtactttaaaatgtgtaaaacaatTACAATGCTCTGACGAGTAGACTGCTTTATTCTCTTAAAGCTATTATGTTATCAAACTCTGCTTGCTGATATTCGATACAGAATTCTTCAGATTCCTAGCTGTGAATTACAACTGGCTGTGTTTATACAGTCTCATACAGAAATCTTCATGGGCGTAAATCCACGTAAATACCGCTGACTTGCCAAGTGTGGGCATTGGGCCATCAGTTCAGAGACAATCCTCAACAGTCTATTTTGGTCCGGCACCAGGTGGTTAATGTGTGCGTAGCAGCCTTTAACCCCTGACCTTCACAATTAAGGTTCTCTGTGTCTTTCAGCAGAAGAAGTTCAGCGTCTTCAGCAGGATGCAGGATTCAGAGGAGTTTCCCTCGCACTGCGGCCAGAATAAGCAGCCCGGAGCTCTGAAGTCCCGCTCTGAGCCTGAGCTTCTGCCAGAGGAGGAGCAGAGCAGTGGGGAAGAGGATCGCTGTAAGGATACACTACAGCCCGCCGACGCCGAGTACTTGAGTGCCAGGTGTGTGGTCTTCACCTATTTTCGTGGAGACATCGGGGATGTGGTGGACGAGCATTTCTCACGCGCTTTGAGCCAGAACAGTGCCTTTAGCAATGACACCAAGGCCAGCAGACTTAACCCTGGAGGACCATGGAAAGAAGGAAACTCCCACTCGGAGGGTCAGACTAGCTCTTTACCTTCATCTCTATGGGGCAGTGGTTACCCGTCCCAGAGCAGCCCTTGTGTCCCATCGTCTCACCACGACTTCCCCCCCAGCGCCGCTTTTCACCCCGCAGACAATGGCATCTGGAGCAGCCACAGCCTCGCTCCTCCTCCTTCTGCTCTCACAGACTCCTGGCACTACAGCCTAGGACCACAGAGTGGAGCAGGATATCCTCACGTCCATGAGATGTACCCTCACATGCACCCACGGCACCCACATCCACACGCTCATCACGTGCTCCATCATGCCCACAGCCCTGCTTTGGACCCCCGCTTCAACCCGCTTCTGTTACCAGGCGTAAGGGCGTCCTGCAGTCCAACATCCTGCACCGATACAATAAAAACAGAGCTGGAGCCCAGCAGTATCCCGACACCGAGCTGGCCTGCTTCTTTCCATGGGTCAGTGGACATCTACGATACAGGTgagataacataaaaaaaaaaaaaaatttactcaacTTGAAATTGTTTGACACATCTTGGTACAGAAtgttggtggctcattccactgtgacgacccgtaatgaataaagggactaagccaaaggaaaatcaatgaatgaatgaatgaacttgctcCAGAG

Function

symbol description
vgll3 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human VGLL3 (vestigial like family member 3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-600 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human VGLL3 (vestigial like family member 3).

Ensembl:

ensembl_id ENSDARG00000038305

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074086 False 1672 mRNA 0.46 3 19007959 19014972
TCONS_00074087 False 1241 mRNA 0.55 4 19007959 19016295
TCONS_00074088 True 1793 mRNA 0.45 2 19010563 19014972

Neighbor

gene id symbol gene type direction distance location
XLOC_037732 NA coding downstream 96244 18908203 ~ 18911715 (-)
XLOC_037731 kctd4 coding downstream 130362 18876036 ~ 18877597 (-)
XLOC_037730 tsc22d1 coding downstream 193222 18732505 ~ 18814737 (-)
XLOC_037729 NA coding downstream 283503 18720676 ~ 18724456 (-)
XLOC_037728 NA coding downstream 430766 18572373 ~ 18577193 (-)
XLOC_037734 NA coding upstream 10857 19027152 ~ 19041027 (-)
XLOC_037735 CR361551.3 coding upstream 13058 19029353 ~ 19029467 (-)
XLOC_037736 CR361551.2 coding upstream 36079 19052374 ~ 19069164 (-)
XLOC_037737 crfb2 coding upstream 57261 19073556 ~ 19092322 (-)
XLOC_037738 pou1f1 coding upstream 116590 19132885 ~ 19161982 (-)
XLOC_037725 NA non-coding downstream 1069654 17919120 ~ 17938305 (-)
XLOC_037719 CT573248.1 non-coding downstream 2183784 16823285 ~ 16824175 (-)
XLOC_037740 AL935292.1 non-coding upstream 331829 19348124 ~ 19348239 (-)
XLOC_037741 NA non-coding upstream 404951 19421246 ~ 19421872 (-)
XLOC_037742 FP017279.1 non-coding upstream 452474 19468769 ~ 19471475 (-)

Expression


Co-expression Network