XLOC_037738 (pou1f1)


Basic Information

Item Value
gene id XLOC_037738
gene name pou1f1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19132885 ~ 19161982 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074094
GTCACAACGGTGGCCGATGAAGAGTCATGAGCTGCCAGGCCTTCAGCACCAGCGACTCCTTCAGCGGTTTAGGTGGAGACACTGGTGCTGCTCTCCCCCTGCTGATGCACCACAGCGCCGCCGCAGACTGCCACAACACCAACATCTGCTCCACAGTCCCCTCAGGTCTCCCATTGGTCCAGTCGTCCAAGCGCTCTCATATGCACCTGTCCACTTCTGCTTTGGGCAATGCGTCAGCCAGCCTCCACTACCCGATGCCCCCATGTCACTATAGCAACCAGCAGACCACCTACGGCATGATGGCAGCACAGGAAATGCTCTCTGCCAGCATCTCCCAGACCCGCATCCTGCAGACCTGCAGTGTACCTCATGCAAACATGGTTAATGGCGCCAACTCACTGCAAGGAGCTCTGGCTCCACGTCTCTACAAGTTCCCTGAGCACAGTTTGGCTGGAGGATCCTGTGCTTTGAGCCACGGCTTCGCTCCTCTTCCCCAGACCCTGCTAACAGATGAGCCCATTCTAGGAGACATCAAGCAGGAGCTGCGCAGGAAGAGCCGGACCCTCGACGAGACCCCCGACATGGACTCGCCTCAGATCCGAGAGCTGGAGAAGTTCGCTAATGACTTCAAATTAAGGAGGATCAAACTTGGTTACACTCAAACCAATGTGGGTGAAGCTCTGGCTGCAGTGCACGGCTCCGAATTCAGCCAAACCACAATCTGCCGCTTCGAGAACCTGCAGCTCAGCTTTAAAAACGCTTGCAAACTCAAATCCATCCTGGCGAAATGGCTGGAGGAGGCAGAGCAGGCCGGCGCTCTTTTTAATGAGAAGATGGGTCTGCACGAGCGCAAGCGGAAGCGCAGAACCACCATCAGTCTGGGGGCGAAGGAAGCGCTGGAGCGGAGCTTTGTGGAGAAGAGCAAGCCGTCGTCTCAAGAGATCGTGCGAATGGCCGAGGGTCTGCATCTGGAGAAGGAGGTAGTCCGAGTCTGGTTCTGCAACCGCCGGCAGAGGGAGAAGAGGGTCAAAACCAGCCTACATCACAGCTCCTTCATGACCAAAGACTGCAGAGcctaagagagaaagagacaggaTTTATTACACAGACACACCAAAGAGCACATGCACTGTACAAATTGCAGAATTCcacaaattcattcatgttgtc

Function

symbol description
pou1f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell fate specification. Predicted to be located in nucleus. Is expressed in adenohypophyseal placode; adenohypophysis; brain; and hypophysis. Human ortholog(s) of this gene implicated in panhypopituitarism and pituitary gland disease. Orthologous to human POU1F1 (POU class 1 homeobox 1).

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040630-7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell fate specification. Predicted to be located in nucleus. Is expressed in adenohypophyseal placode; adenohypophysis; brain; and hypophysis. Human ortholog(s) of this gene implicated in panhypopituitarism and pituitary gland disease. Orthologous to human POU1F1 (POU class 1 homeobox 1).

Ensembl:

ensembl_id ENSDARG00000058924

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074094 True 1170 mRNA 0.55 7 19132885 19161982

Neighbor

gene id symbol gene type direction distance location
XLOC_037737 crfb2 coding downstream 40563 19073556 ~ 19092322 (-)
XLOC_037736 CR361551.2 coding downstream 63721 19052374 ~ 19069164 (-)
XLOC_037734 NA coding downstream 91858 19027152 ~ 19041027 (-)
XLOC_037735 CR361551.3 coding downstream 103418 19029353 ~ 19029467 (-)
XLOC_037733 vgll3 coding downstream 116590 19007959 ~ 19016295 (-)
XLOC_037739 zgc:152951 coding upstream 178234 19340216 ~ 19366538 (-)
XLOC_037740 AL935292.1 coding upstream 186142 19348124 ~ 19348239 (-)
XLOC_037741 NA coding upstream 259264 19421246 ~ 19421872 (-)
XLOC_037742 FP017279.1 coding upstream 306787 19468769 ~ 19471475 (-)
XLOC_037743 wdr4 coding upstream 315705 19477687 ~ 19489264 (-)
XLOC_037732 NA non-coding downstream 221170 18908203 ~ 18911715 (-)
XLOC_037729 NA non-coding downstream 408429 18720676 ~ 18724456 (-)
XLOC_037728 NA non-coding downstream 555692 18572373 ~ 18577193 (-)
XLOC_037746 NA non-coding upstream 492724 19654706 ~ 19658313 (-)
XLOC_037748 BX677668.2 non-coding upstream 553600 19715582 ~ 19716857 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000080_03379883_03383919 POU1F1 coding CI01000080 null 3379052 ~ 3383957 (+)
bowfin (Amia calva) AMCG00014267 pou1f1,LOC107688653,LOC107551978,LOC107661330 coding CM030128.1 CM030128.1 7229073 ~ 7237562 (+)