XLOC_037746


Basic Information

Item Value
gene id XLOC_037746
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 19654706 ~ 19658313 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075333
aacaaaaaagtttgaCATTAATAATGATTGTTATAATATTAAGGGCAGCTATCACCAATAAAGATTTACTATAATActatgtaattaatttattttagaatgTATAATTTACCGTTTTTAACAGTTACTTCTCTCACTTGATAATTACAACTGTTAAATCAATTTGCCCTTCTGAATACCAAAAATGCCACAGGAAAGATATTGCCTTAATTTCTGACATATATTTTCTAAAAGTATAGCGCATATAAATACATCCAAGTCAATAATGCTTTtcaaaaacaacttatttttaaatatatattttgtttaaatcaaGAGCATCATTTAATATGGGAACTTTTTCATCATTGTATAAAAATGTCTAGAGAGATAAGACATTTTTCAGGCATGCTATTCATTGTAAAgcaatgtcattttgtttttgtggGTACAATGACTGTTATGTAGCATTTTAGCTGTTTAGCATTAGcttctattatattttaatttatatgaaCTAGAATGgtgcagcatggtggtgcagtgggtagcataatagcctcacagcaagaagttagctggtttgagcctcgactgggtcaattggcatttctgtgtggagtttgcatattctctctgtgttcgcgtgggtttcctcaaggtgcttcaatttcccccacagtccaaaaacatgtggtataggtgaattgggtaggcaaaattgtccttagtgtatgagtgtatatgtatgtttcccagtgatggattgcagctggaagggcatctgctgcgtaaaacatgctggataagttggcatttcattccgctgtggcaaccacagattaacaaagagactaagccgaaaagaaaatgaataaatgaactacaAAGTCTTCTGCTGtacaacgaaaaaaaaaaaacatgctatagGACCTTTGGTGCTACGAGTGGTTTATTAACATATAGGACATACTGATACATAATTTAACGAAGTACATTTTTGTAATCATATCTCATTCAGCCTGTACAAAAGTGGCTTAAGCATTTCTGGTATGGACACAGTTGTTACACCTCTACATTtatcacacacacattaacaggAACAACCACACCTTATTTAAACATCAACAATCCGCTCATGTTTACCATCATGTTATGATTAAGAGTTATCTGTGGTGCTCAGAAGAAAGACTGTTGGCCTTCTTCTGAGCAATTCCAAGCATGGTTAAGATCCTGTTGCAACTGTGGATAATTATAGCAGGGTTATTGTGGTTATGGTGGTTTCGAGCCCAAAAAATTTCCTATCATGATGTCAGCGTTCCTATGGAACTGGAAAAGCCAACATAATCTCACAGCAATTAAGTCTCTTTTATGTTTTAAGCCCCAACTGatccaatggttgggtttaggggtggggattGGGGACTAGCttcctttttaaatgtgtttttgtatgaacaaatttgtatgaattagcaaacttttctgacaatactgtttgcttttgaaaaaaatatgtacttttcCTCCTGAGTTTGGGCTCAAAAAACAATTCTAAAAATAGAAAGTTCTTCAGAGACAAAAGGCAATGTCCACATAATGTACATGGGTATATTTTTAAATGGGCTTTTCCCTGCTTTCATTTATTCtacatgaaaatgcaaaaatgcacTGTGGTGTAAGTTAAGAGCATGCCGAACCAACAGGTGCCATAATGAGACCTTTATGCTGGGTCCACTCCAAACAGGGAATTAAGTATTTTCATGAGTAAAACTGCAAACAAATCAATGCAAACATGAGAACAGAGGTGGATTTCCCTACCGCGGATGAATGAcatgaaatatgaaatatgcGTTTGCCACAAATGGGCAGAATTTTGCCTCATTCTCCTCTTCCACATTTAGTGTGAACCCTGCCGTGTTGATCAGTCAGAAAGAAGAAAACAGTACGCTTTCTGATGTCATGAAGCCAAACTCTGGTTGTAGTGTCCACACGTCCACACTGTACCTGCGGTTATGGAAAATTTAAAAAGTCAATAAACATATGGGTGTACCTGTCCTTTCCATTCAAGAAAGTCAAAATTTGTGCAAATTTCCATTATTGTTTGTTGCGCCGAAGGGTTCATTCGTCAATACAATCCAAATACAAGTATTAATATGTCCAAACATGTTGAGAAGTAAAACCTTTCAATGGTTGTACGTATTCACAGTGCAGTTAAAGAtagtttgtgtctgttttgtaaAGCTTTTTGATTCTAGCTAAACACTGTAACCAAATGTAGCCCCATGTGAATATAAGAGCAGGACACAGAAGCGGCTGAGTTATGACTGAATGCATTCAAATGAACATAGCTTCACGTGTCTTTAGATAAACGCATTAACTTATAGACTAAATCTATGCATTTTCATGAGCAACTGTATTTTCTTATCTTTATCTACTATAGCTGAcgagacatttttcttttcttttttttaaacgttGTGTCTACTTATAAATGGTTGACTTGTGTTTGACAAAGttggttgtttttgtttgtttgaaggtCAGTTTAAAATGTTAATCGTTCTGCTCATTTATTCTGATGTATAGACTACAGTAGTTGGATTTTGTGCATGTACATGTCTTCTACTTGTTTGAAAACAATAATATCTTGATTCATCAGTCTGGCTTGTTGTGGGTAAACTTCTTGTAAtgtaattttcaataaaaaagttCATAAGCCTGGTTTTCAACCAACAACATTTAAGCTGTTTACATCACAAAGACAAAAAAAGGGGAAAGTTTTCCATGAAGGTTAAGTTGCTGACGTTTTTGAAATTATTCCAGTTTACAAAGATCCACAATAGAACACTCACTGTGTCTCAGTTGGTTTACTCACACATACTTGCCTTGTAAgtatttgagtgtgtaacagaggaGTTGGCAGATTTTAGAACATACTACATAATCACATTTTTAACAGTCACAATGTTATTATATGCTGATCAAATATCAGCAAAGGTAATCGTAACATGAAATAAGCTAAGATATGAATTATTAGCCTAATCAATCAGATGCATTTACTGCCCAACAAAGGCaagcattatgtttttttatccATATTTTTAGTAGGCAGTAAGCATGTGCAAAGATCCGTACTTTCCATTCCAGCTATAAATAGTTGACCACTGGTATAACTCATTTACAcagtttgacacatttaaaaatatatatcaacaaGGAAGTATAGTACGCAAATTTGGATGCAGAAACAATATATGTCAATAGACAGGTTCCAGAGGTATAAATATTTTCAGTCACACTTTAAGGTTTCATaagttattgttagttaatgtatgtacataacaaactattattaattaacaatactttaatcattgtttaagaatgcatttaaatccatatgcatgcttgtttacattagttaatgggTTGGTTAAACTAGcaataaacagttttatttgcATTAACGTAAACAAAGATggtaaaaatactgtaataaatgtattgttcattgtttgtacaGGCTAGTAAACCTATTCACATTAACTATTTGTTAACGTATATATTACCCTAATTTTTTAAttggaaaaaaacatttgtaactGTAATTGGCAAACCATCagaag

Function

GO:

id name namespace
GO:0042982 amyloid precursor protein metabolic process biological_process
GO:0042983 amyloid precursor protein biosynthetic process biological_process
GO:0042984 regulation of amyloid precursor protein biosynthetic process biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:1903018 regulation of glycoprotein metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0010559 regulation of glycoprotein biosynthetic process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075333 True 3608 lncRNA 0.34 1 19654706 19658313

Neighbor

gene id symbol gene type direction distance location
XLOC_037745 fgf9 coding downstream 44270 19604867 ~ 19610436 (-)
XLOC_037744 tmprss3a coding downstream 68858 19550367 ~ 19585848 (-)
XLOC_037743 wdr4 coding downstream 165442 19477687 ~ 19489264 (-)
XLOC_037742 FP017279.1 coding downstream 183231 19468769 ~ 19471475 (-)
XLOC_037741 NA coding downstream 232834 19421246 ~ 19421872 (-)
XLOC_037747 si:ch211-141e20.2 coding upstream 23256 19681569 ~ 19762801 (-)
XLOC_037748 BX677668.2 coding upstream 57269 19715582 ~ 19716857 (-)
XLOC_037749 BX677668.1 coding upstream 92038 19750351 ~ 19756102 (-)
XLOC_037750 NA coding upstream 113462 19771775 ~ 19773421 (-)
XLOC_037751 NA coding upstream 199040 19857353 ~ 19864309 (-)
XLOC_037740 AL935292.1 non-coding downstream 306467 19348124 ~ 19348239 (-)
XLOC_037734 NA non-coding downstream 613679 19027152 ~ 19041027 (-)
XLOC_037752 BX957345.1 non-coding upstream 287321 19945634 ~ 19964772 (-)
XLOC_037735 CR361551.3 non-coding downstream 625239 19029353 ~ 19029467 (-)

Expression


Co-expression Network