G1882845


Basic Information

Item Value
gene id G1882845
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56562702 ~ 56564506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2153896
gagtaatacattactgtaggtggggtgtcaataataaactgctgtagtttggggtttcagtaatacattactgtaggtggggtgtcagtaatacattactgtaggtggggtgtcagtaaaaaaggactgtaggtggggtgtcagtaatacattactgtaggtggggtgtcaataatacattactgtaggtggggagtcagtaataaaggactgtagtttggggtgtcagtaatacattactgtaggtgggtgtcagtaatacattactgtaggtggggtgtcagtaataaaggACTGTAGGTGGGTTGTCAGTAATA
>TU2153897
attactgtaggtggggtgtcagtaatacattactgtatttagggtgtcagtaataaaggactgtaggtggggtgtcagtaattcATTACTGTatgtggggtgtcagtaatacattactgtaggtggggtgtcaataatacattactgtaggtggggagtcagtaataaaggactgtagtttggggtgtcagtaatacattactgtaggtgggtgtcagtaatacattactgtaggtggggtgtcagtaataaaggACTGTAGGTGGGTTGTCAGTAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2153896 False 317 lncRNA 0.41 2 56562702 56564506
TU2153897 True 279 lncRNA 0.41 2 56564030 56564506

Neighbor

gene id symbol gene type direction distance location
LOC110502999 NA coding upstream 521348 55985543 ~ 56041354 (+)
LOC110502997 LOC106610965 coding upstream 624117 55935205 ~ 55938585 (+)
dync2li1 dync2li1 coding upstream 1380498 55173043 ~ 55182204 (+)
LOC110502992 LOC106610889 coding upstream 1393163 55071188 ~ 55169539 (+)
LOC118943891 NA coding upstream 1599964 54950534 ~ 54962738 (+)
LOC110503001 LOC106611028 coding downstream 48560 56613066 ~ 56727194 (+)
LOC118943924 NA coding downstream 138225 56701366 ~ 56709966 (+)
LOC110503003 LOC106611055 coding downstream 247898 56812404 ~ 56828732 (+)
LOC110503004 LOC106611018 coding downstream 264550 56829056 ~ 56843475 (+)
LOC118943926 NA coding downstream 814623 57379129 ~ 57399437 (+)
G1882844 NA non-coding upstream 190 56561632 ~ 56562512 (+)
G1882843 NA non-coding upstream 2630 56559422 ~ 56560072 (+)
G1882691 NA non-coding upstream 33689 56527092 ~ 56529013 (+)
G1882819 NA non-coding upstream 82436 56471375 ~ 56480266 (+)
G1882818 NA non-coding upstream 89569 56470365 ~ 56473133 (+)
G1882693 NA non-coding downstream 82665 56647171 ~ 56647988 (+)
G1882883 NA non-coding downstream 106954 56671460 ~ 56671845 (+)
G1882884 NA non-coding downstream 108055 56672561 ~ 56672944 (+)
G1882891 NA non-coding downstream 130260 56694766 ~ 56695155 (+)
G1882831 NA other upstream 19446 56533617 ~ 56543256 (+)
G1882830 NA other upstream 24219 56529795 ~ 56538483 (+)
G1881371 NA other upstream 1559030 55002782 ~ 55003672 (+)
G1879958 NA other upstream 2706972 53851671 ~ 53855730 (+)
LOC118943904 NA other upstream 3162415 53398184 ~ 53400297 (+)
G1883457 NA other downstream 447531 57012037 ~ 57013218 (+)
G1885587 NA other downstream 2297708 58862214 ~ 58864502 (+)
G1886557 NA other downstream 3159758 59724264 ~ 59736661 (+)
G1886558 NA other downstream 3163240 59727746 ~ 59736471 (+)

Expression


Co-expression Network