XLOC_037929


Basic Information

Item Value
gene id XLOC_037929
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31758633 ~ 31763256 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074460
tacttgaagaccgacgggttaacatcactgctgaggaactgcactattgattgtcttcaataaagtcttttctccgtaagaactttggtcagcttacttttttatgtattagagtaatctaatacattggcgagccacccaagaacggttaagccaaatacagcaaaatctaacaatttggcgagccagccaggagagaCTGAAAAGAGGAAAACTCATCAACTGCAACAAGAAATGAACTGAAGAATCTTGGAGAATCTACAGTTAAAGCAGAAGATAAACAGATTTTGTTTGTGGACGAGTCCTGGATCTACATATTGTATCTGtggacacactttattttaatcaacTGGATCTCATCTCAAAGATCCTAGTTTGGTGTTCCGATGTTCCAGAGAATGACCAGAGACACACAACACCAGACACCTAGATGAACACACCTGAACATTCACAGAACACAACCACATCCGCTACTTCCACAACATCACAACTTCAAACAGAAATGGACTCAGGCATTTAAGGAAATGCAAGCTTCACCATGCCTTTTTATTCTGTCACTTTAAGTTATATAGCCTGTATTGCAGATTGCTGTATACATGATTAACTTGTTTTATGATCAAATATGATCAGAGGAGGGATTGAAAGATTATGTCCATTTTAGTTCAGTtgcatttacattgattaaactCTTATGTGATATGATGGGGTGACCTGTGCCTCGACCCCCACAAACTGATAGGTGTGAACTAAATGACCCTTTTACAATCTCAATGGGTATTAAcaaaacaacagctgaaacatctgaagagggtcctgctgagcctcgtaaacagaatggtttgtttgatgctaatataaagtactgtctcacagacagtactttgggttaagttacttgaagaccgacgggttaacatcactgctgaggaactgcactattgattgtcttcaataaagtcttttctccgtaagaactttggtcagcttacttttttatgtattagagta
>TCONS_00074461
atctgaataaatatttgGACAAAAGGCTGGGACTGAGGAAGTGTCGTGATGATGTATGCAAGAAGTACAGCATCAAGCACTCAGAGAGTGGATTATGGGCATTGCCGGACATTAAAAGGGCTTATGGAAAGACACAGCGCTTATGCACAACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACATGAGCATAAACAAGTTTGATGTCCTAGTAGATGGTGTTGCCAAACAAGCCGTAAAGGAGAGAGGTGAACATACAGCGGCATTAAGACAGCTTCAGCAAGACCACCGATCAGTCTTAGACAGAAAGCAGACTGCAAATGAAAACTCAACAAAAGAAATGCTGATGGACGATGCAAAAGAACTGCGTGATGGCAACCAATGCAGTATGGATGGAAACAGACTATGCCCTTTTGAACATGCCCCAAGCCAGCCCATGTCCACAGAAAATCTGACATCTGACAGCCTTGTCCAATACAAAGCAAGACTCAGCCTGGCAGTACATGAGGACAATAATAAAGTTTTGTCACCTCTGAAGAGGGGCCATAGTTTAGAGCCCAGAAAATGGGTAAAGATACGACAACCTCAGATATTACCATTAAAATCTAGGTGTGAGAACTCATATGAGAAGGTTTTAGTATCTGATTCAATAAATAAAGTTCAGGGACTTGATAAATGGATCAACGTGAGTTTGC
>TCONS_00074462
ccgacgggttaacatcactgctgaggaactgcactattgattgtcttcaataaagtcttttctccgtaagaactttggtcagcttacttttttatgtattagagtaatctaatacattggcgagccacccaagaacggttaagccaaatacagcaaaatctaacaatttggcgagccagccaggagagaCTGAAAAGAGGAAAACTCATCAACTGCAACAAGAAATGAACTGAAGAATCTTGGAGAATCTACAGTTAAAGCAGAAGATAAACAGATTTTGTTTGTGGACGAGTCCTGGATCTACATATTGTATCTGtggacacactttattttaatcaacTGGATCTCATCTCAAAGATCCTAGTTTGGGCACTGTCCTGTACTTCCCATGGCTGAGTCTGCAAGAAACTATGCTAATGGAGCTACCCTGAGAACAACAACAGAAAAGCATGGAACAGAACCTCCATGTGTTACCATTGATCAGATGTTggaaaatctgaataaatatttgGACAAAAGGCTGGGACTGAGGAAGTGTCGTGATGATGTATGCAAGAAGTACAGCATCAAGCACTCAGAGAGTGGATTATGGGCATTGCCGGACATTAAAAGGGCTTATGGAAAGACACAGCGCTTATGCACAACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACATGAGCATAAGTGTGAGATTGACAGATTGGAACGTGAGAACAAAGCGGAGAAAGCTAAAGTTCGAGCACTGGCTGAACAATTGCAAAACTTAAAGAAGGATAAAGAAAGACTGGAAAAGGAAAACAACAAGCTATTGAATTTGATCTCTAAACAGCTGGAATCAAGATCTTCGAGCAGCTTTGTTGACAGTGAGGCTGATCTTTCCATCAACACCTGTGTTCATGACCCAGTGAACTCAAAGATTAGATTAGCTCCTGTGATTGTCAAACACAGAAGGACTAACGTTGAAATTGACAATGAGGAGGGCTATGAAGACAATGGAGAGAGACGAACTCGCACTGTGACAAAAGTGGTAAAGAAGTATGTTCCATACAGGACATACCATCCAGCTACTCCAGAGCAAGTTGACAAATGGTCAAAAGAGCTGCCAGATGTATACAAACAACCACGAAAGGTTTGGCAGTTTCTTCAACGACTGCAGAAAATCTACATTTTACATCCACTAGACGGTGTGATGATTCTTAATGTCACCCTAAGAGACAGTGACCAAAAGAGACTTACAGAAAGTGTTGAAAGAAGGATTGGTGAATCACAAGAAAACATAGAGGATGGATGGGAAGCCATAAAAAACTTCTTGTTTGAACTGAAACCTGCAGAGGTCAATTGGGCAAGAATTACCTCATGCATGCAGAAAACTGGAGAAAGTGTTGCAGAGTTTGAAGAACGCTTCAGACAAATATGGACGGAACATTCTGGTCTGAATACAAGTGAAGATCTTGACAAAGACACTGGAATTCCCCTGAAAACAGCATTTGTCAATGGACTCAATCCTGAGATTTCTAAAGATCTTAAAATCAGGTATGATGACTGGGACAGCACTGTAACAACTTTCATCCAGATTGTTGAATGGTCAGCTAAACTGGAGAGAGCACAAGATGTCAGACTTAGATCTTTGCAATCGGAAAGTTTGTTTTACAAGAACAGAAGAATTGAGGATGAGCAAAAAGAACGTGAGTATATGGGATACTCAAAACTACGAACTAAAGGAAGATGCAGAAATTGCAATGAAGAAGGACACTGGGCCCGTGAGTGCAAGCTCAGTTTAAAACATCAAAGCAAGGATGATGACCACCTGTTCAAGCAGTTTCAGCAGCtaacaatacaacaaaaacag

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0048880 sensory system development biological_process
GO:0060485 mesenchyme development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0150063 visual system development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0030684 preribosome cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000079126

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074460 False 1008 lncRNA 0.39 2 31758633 31763256
TCONS_00074461 False 712 processed_transcript 0.42 2 31759506 31761529
TCONS_00074462 True 1870 mRNA 0.41 2 31760154 31763246

Neighbor

gene id symbol gene type direction distance location
XLOC_037927 nalcn coding downstream 11527 31589425 ~ 31747106 (-)
XLOC_037926 tmtc4 coding downstream 233507 31494941 ~ 31525126 (-)
XLOC_037925 zic5 coding downstream 444309 31274108 ~ 31314324 (-)
XLOC_037924 NA coding downstream 486707 31264412 ~ 31271926 (-)
XLOC_037923 BX469902.1 coding downstream 570774 31187738 ~ 31187859 (-)
XLOC_037930 NA coding upstream 34589 31797845 ~ 31810047 (-)
XLOC_037931 fgf14 coding upstream 74788 31838044 ~ 31915423 (-)
XLOC_037932 NA coding upstream 294450 32057706 ~ 32058334 (-)
XLOC_037933 BX530407.2 coding upstream 333075 32096331 ~ 32105780 (-)
XLOC_037934 ankrd44 coding upstream 346655 32109911 ~ 32158288 (-)
XLOC_037918 NA non-coding downstream 868138 30865653 ~ 30890495 (-)
XLOC_037919 NA non-coding downstream 880417 30876643 ~ 30878216 (-)
XLOC_037916 BX571809.2 non-coding downstream 1050679 30707839 ~ 30707954 (-)
XLOC_037937 NA non-coding upstream 434072 32197328 ~ 32209640 (-)
XLOC_037938 NA non-coding upstream 451901 32215157 ~ 32221673 (-)

Expression


Co-expression Network