XLOC_037937


Basic Information

Item Value
gene id XLOC_037937
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32197328 ~ 32209640 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074989
CTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGACTTTGGCACATGCATGAAGATGGACTCGGTGTGTGGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACAcaaaaaaatgccaaaaacagACACCCAAAACCCTACGCATGCTGCGCGACACAGGGGCGTGAACCTGCAGGACCCAGACGCACAGTCCACTCGAAGCTGCTGTGGGAACTAAAGGCCTGTCAACACTCCATCATGGGAGACCACGACACCTTCTCCTCCCTAAAATCCCACCCTTCACCCTTTCACCTCCCAAGACGGAtaaggaaagagaaagaaagagaaaggaaTACCAGGAAGAGCTCGAGGAAAACGCCTCACTCATGCCACAAAGAGATTTTTCAAGGAAGACTTCTGGTGGACGGGGCTGAAAGCGAACGGACGATGGATTCTGTCATGTCTGGCAGTAAATATGGATTCTGTATTACTTTCAAGTCAACAAGAATTTCCACCTCAGTTCATCCTCATTATGCAAGCACCATGTAGAGATAAAGGATTGGAAAAGA
>TCONS_00074471
CTGTGCTGTGCTTTCCAACATGAAAAGTACCTTTATTTGGGGATGGAGTTCATGCCAGGTGGAGATCTGGTGAATCTGACCAGGAATGGGCTCAATTCTATACGGCAGAAGTGGTGCTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGACTTTGGCACATGCATGAAGATGGACTCGACTGGTATGGTACGCTGTGAACACTGCTGTTGGGACACCTGATTACATTTCTCCAGAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGCCTGTTGGTGTTTTCATTTATGAGCTTCTAGTGGGCGACACTCCATTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaaaaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACA
>TCONS_00074990
CTGACCGCCGCTGCGAGCTGCTCAACGGTAGAGACGCCCTGTAGCCAGAAGTGACTCGTGTGTGCGGGGAGAGCCCTGGTTCTTCTTGAGCGACGCTGCTCCATCAAGATGACCCAAGAACAACTTTCCAAAAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGCCTGTTGGTGTTTTCATTTATGAGCTTCTAGCGACACTCCATTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaaaaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACA
>TCONS_00075388
CTGTGCTGTGCTTTCCAACATGAAAAGTACCTTTATTTGGGGATGGAGTTCATGCCAGGTGGAGATCTGGTGAATCTGACCAGGAATGGGCTCAATTCTATACGGCAGAAGTGGTGCTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGACTTTGGCACATGCATGAAGATGGACTCGACTGGTATGGTACGCTGTGAACACTGCTGTTGGGACACCTGATTACATTTCTCCAGAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGCCTGTTGGTGTTTTCATTTATGAGCTTCTAGTGGGCGACACTCCATTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaaaaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGTGAGACTGAGAAAATGAAAGtttgatttgagttttttttttttcttgtaaaattcaGACTCTTACTCGCTTAATATCcccttacttgtttgtttttagaggTTGGCTGgtaacattaatttttttattaatttgaatttaactttactgtaaaaaa

Function

GO:

id name namespace
GO:1902285 semaphorin-plexin signaling pathway involved in neuron projection guidance biological_process
GO:1902287 semaphorin-plexin signaling pathway involved in axon guidance biological_process
GO:0010770 positive regulation of cell morphogenesis involved in differentiation biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0002116 semaphorin receptor complex cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092012

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074989 False 668 lncRNA 0.49 3 32197328 32205427
TCONS_00074471 False 619 unprocessed_pseudogene 0.47 4 32200650 32205543
TCONS_00074990 False 449 lncRNA 0.49 4 32200650 32209640
TCONS_00075388 True 684 lncRNA 0.42 3 32203075 32205543

Neighbor

gene id symbol gene type direction distance location
XLOC_037936 pimr143 coding downstream 5708 32190670 ~ 32191620 (-)
XLOC_037935 sf3b1 coding downstream 20211 32161623 ~ 32177117 (-)
XLOC_037934 ankrd44 coding downstream 39040 32109911 ~ 32158288 (-)
XLOC_037933 BX530407.2 coding downstream 91548 32096331 ~ 32105780 (-)
XLOC_037932 NA coding downstream 138994 32057706 ~ 32058334 (-)
XLOC_037938 NA coding upstream 5517 32215157 ~ 32221673 (-)
XLOC_037939 NA coding upstream 18918 32228558 ~ 32235223 (-)
XLOC_037940 NA coding upstream 28578 32238218 ~ 32268758 (-)
XLOC_037941 NA coding upstream 29093 32238733 ~ 32250933 (-)
XLOC_037942 NA coding upstream 61426 32271066 ~ 32279187 (-)
XLOC_037930 NA non-coding downstream 387281 31797845 ~ 31810047 (-)
XLOC_037928 BX571786.1 non-coding downstream 416862 31755081 ~ 31780466 (-)
XLOC_037929 NA non-coding downstream 434072 31758633 ~ 31763256 (-)

Expression


Co-expression Network