XLOC_037939


Basic Information

Item Value
gene id XLOC_037939
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32228558 ~ 32235223 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074992
CTGACCGCCGCTGCGAGCTGCTCAACGGTAGAGACGCCCTGTAGCCAGAAGTGACTCGTGTGTGCGGGGAGAGCCCTGGTTCTTCTTGAGCGACGCTGCTCCATCAAGATGACCCAAGAACAACTTTCCAAAAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGTCTGTTGGTGTTTTCATTTATGAGCTTCTAGCGACACTCCATTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaagaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACA
>TCONS_00074473
CATTTCTCCAGAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGTCTGTTGGTGTTTTCATTTATGAGCTTCTAGTGGGCGACACTCCATTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaagaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGTGAGACTGAGAAAATGAAAGtttgatttgagtttttttttttttttcttgtaaaattcaGACTCTTACTCGCTTAATATCcccttacttgtttgtttttagaggTTGGCTGgtaacattaatttttttattaatttaaatttaactttactgtaaaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074992 False 449 lncRNA 0.49 4 32228558 32235223
TCONS_00074473 True 400 lncRNA 0.36 2 32230941 32231427

Neighbor

gene id symbol gene type direction distance location
XLOC_037938 NA coding downstream 6885 32215157 ~ 32221673 (-)
XLOC_037937 NA coding downstream 18918 32197328 ~ 32209640 (-)
XLOC_037936 pimr143 coding downstream 36938 32190670 ~ 32191620 (-)
XLOC_037935 sf3b1 coding downstream 51441 32161623 ~ 32177117 (-)
XLOC_037934 ankrd44 coding downstream 70270 32109911 ~ 32158288 (-)
XLOC_037940 NA coding upstream 2995 32238218 ~ 32268758 (-)
XLOC_037941 NA coding upstream 3510 32238733 ~ 32250933 (-)
XLOC_037942 NA coding upstream 35843 32271066 ~ 32279187 (-)
XLOC_037943 hspd1 coding upstream 51382 32286605 ~ 32300783 (-)
XLOC_037944 rftn2 coding upstream 77697 32312920 ~ 32343673 (-)
XLOC_037933 BX530407.2 non-coding downstream 122778 32096331 ~ 32105780 (-)
XLOC_037932 NA non-coding downstream 170224 32057706 ~ 32058334 (-)
XLOC_037930 NA non-coding downstream 418511 31797845 ~ 31810047 (-)
XLOC_037945 BX511187.1 non-coding upstream 120012 32355235 ~ 32358665 (-)
XLOC_037946 CR391943.1 non-coding upstream 290032 32525255 ~ 32525371 (-)

Expression


Co-expression Network