XLOC_037940


Basic Information

Item Value
gene id XLOC_037940
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32238218 ~ 32268758 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074993
TCTGTATTACTTTCAAGTCAACAAGAATTTCCACCTCAGTTCATCCTCATTATGCAAGCACCATGTAGAGATAAAGGATTGGAAAAGAGATAAAGGAACACAGAATGGACTGAAGAAGTTATTATTAACCAACAAACCTTCCCATTCTCAGCCCCTGGAAGGGTCCGTAAAGCCCCTTTTAACATTCAGAAGTCTTCAAGCGAAATCTACACTGAGTATCCATATGGTCTGGGCTCTCCCATTTAATCTCAACTCTAACACTGGAAGAAAGTCAGCACCTTAAACTTAAACTAACCCTTCAGTTATTCATCTATGAGCCACATCTACTAAATTTATAACACAAAGGAACACCGAAGCAGAACttcatatgttttatttcagctttatttattgCCTTTGTTTGAACTCATCTCCCTTTGCGCAGCTCTTCATTCATCTATGACCCAAAAAGTATTGAAGAAAGTCAATGTTGTCTTCCCTATCCCATTTACTTCTCCCCACAGCATTGACCTCAAAGTTCAGTGTTGATGTTCACAAAACAACAGCGAGCTCTACGATGCCTTCTTAAtcttcttttagctttgtgtaaaCTACTGTTTGAGAG
>TCONS_00075389
CTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGACTTTGGCACATGCATGAAGATGGACTCGGTGTGTGGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACAcaaaaaaatgccaaaaacagACACCCAAAACCCTACGCATGCTGCGCGACACAGGGGCGTGAACCTGCAGGACCCAGACGCACAGTCCACTCGAAGCTGCTGTGGGAACTAAAGGCCTGTCAACACTCCATCATGAGAGACCACGACACCTTCTCCTCCCTAAAATCCCACCCTTCACCCTTTCACCTCCCAAGACGGAtaaggaaagagaaagaaagagaaaggaaTACCAGGAAGAGCTCAAGGAAAACGCCTCACTCGTGCCACAAAGAGATTTTTCAAGGAAGACTTCTGGTGGACGGGGCTGAAAGCGAACGGACGATGGACTCTGTCATGTCTAGCAGTAAATATGGATTCTGTATTACTTTCAAGTCAACAAGAATTTCCACCTCAGTTCATCCTCATTATGCAAGCACCATGTAGAGATAAAGGATTGGAAAAGAGATAAAGGAACACAGAATGGACTGAAGAAGTTATTATTAACCAACAAACCTTCCCATTCTCAGCCCCTGGAAGGGTCCGTAAAGCCCCTTTTAACATTCAGAAGTCTTCAAGCGAAATCTACACTGAGTATCCATATGGTCTGGGCTCTCCCATTTAATCTCAACTCTAACACTGGAAGAAAGTCAGCACCTTAAACTTAAACTAACCCTTCAGTTATTCATCTATGAGCCACATCTACTAAATTTATAACACAAAGGAACACCGAAGCAGAACttcatatgttttatttcagctttatttattgCCTTTGTTTGAACTCATCTCCCTTTGCGCAGCTCTTCATTCATCTATGACCCAAAAAGTATTGAAGAAAGTCAATGTTGTCTTCCCTATCCCATTTACTTCTCCCCACAGCATTGACCTCAAAGTTCAGTGTTGATGTTCACAAAACAACAGCGAGCTCTACGATGCCTTCTTAAtcttcttttagctttgtgtaaaCTACTGTTTGAGAG
>TCONS_00074996
CTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGACTTTGGCACATGCATGAAGATGGACTCGGTGTGTGGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACAcaaaaaaatgccaaaaacagACACCCAAAACCCTACGCATGCTGCGCGACACAGGGGCGTGAACCTGCAGGACCCAGACGCACAGTCCACTCGAAGCTGCTGTGGGAACTAAAGGCCTGTCAACACTCCATCATGAGAGACCACGACACCTTCTCCTCCCTAAAATCCCACCCTTCACCCTTTCACCTCCCAAGACGGAtaaggaaagagaaagaaagagaaaggaaTACCAGGAAGAGCTCAAGGAAAACGCCTCACTCGTGCCACAAAGAGATTTTTCAAGGAAGACTTCTGGTGGACGGGGCTGAAAGCGAACGGACGATGGACTCTGTCATGTCTAGCAGTAAATATGGATTCTGTATTACTTTCAAGTCAACAAGAATTTCCACCTCAGTTCATCCTCATTATGCAAGCACCATGTAGAGATAAAGGATTGGAAAAGA
>TCONS_00074475
CTGTGCTGTGCTTTCCAACATGAAAAGTACCTTTATTTGGGGATGGAGTTCATGCCAGGTGGAGATCTGGTGAATCTGACCAGCAACTATGACATCCCAGAGGAATGGGCTCAATTCTATACGGCAGAAGTGGTGCTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGACTTTGGCACATGCATGAAGATGGACTCGACTGGTATGGTACGCTGTGAACACTGCTGTTGGGACACCTGATTACATTTCTCCAGAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGTCTGTTGGTGTTTTCATTTATGAGCTTCTAGTGGGCGACACTCCAGTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaagaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACA
>TCONS_00074997
ACCGCCGCTGCGAGCTGCTCAACGGTAGAGACGCCCTGTAGCCAGAAGTGACTCGTGTGTGCGGGGAGAGCCCTGGTTCTTCTTGAGCGACGCTGCTCCATCAAGATGACCCAAGAACAACTTTCCAAAAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGTCTGTTGGTGTTTTCATTTATGAGCTTCTAGCGACACTCCAGTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaagaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATATGAGACA
>TCONS_00075390
CTGTGCTGTGCTTTCCAACATGAAAAGTACCTTTATTTGGGGATGGAGTTCATGCCAGGTGGAGATCTGGTGAATCTGACCAGCAACTATGACATCCCAGAGGAATGGGCTCAATTCTATACGGCAGAAGTGGTGCTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGACTTTGGCACATGCATGAAGATGGACTCGACTGGTATGGTACGCTGTGAACACTGCTGTTGGGACACCTGATTACATTTCTCCAGAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGTCTGTTGGTGTTTTCATTTATGAGCTTCTAGTGGGCGACACTCCAGTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaagaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGTGAGACTGAGAAAATGAAAGtttgatttgagttttttttttttttcttgtaaaattcaGACTCTTACTCGCTTAATATCcccttacttgtttgtttttagaggTTGGCTGgtaacattaatttttttattaatttgaatttaactttactgtaaaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000113925

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074993 False 604 lncRNA 0.39 2 32238218 32257884
TCONS_00075389 False 1184 lncRNA 0.44 4 32238218 32264523
TCONS_00074996 False 668 lncRNA 0.49 3 32257797 32264523
TCONS_00074475 False 638 unprocessed_pseudogene 0.47 4 32259814 32264658
TCONS_00074997 False 446 lncRNA 0.49 4 32259814 32268758
TCONS_00075390 True 705 lncRNA 0.42 3 32262205 32264658

Neighbor

gene id symbol gene type direction distance location
XLOC_037939 NA coding downstream 2995 32228558 ~ 32235223 (-)
XLOC_037938 NA coding downstream 16545 32215157 ~ 32221673 (-)
XLOC_037937 NA coding downstream 28578 32197328 ~ 32209640 (-)
XLOC_037936 pimr143 coding downstream 46598 32190670 ~ 32191620 (-)
XLOC_037935 sf3b1 coding downstream 61101 32161623 ~ 32177117 (-)
XLOC_037942 NA coding upstream 2308 32271066 ~ 32279187 (-)
XLOC_037943 hspd1 coding upstream 17847 32286605 ~ 32300783 (-)
XLOC_037944 rftn2 coding upstream 44162 32312920 ~ 32343673 (-)
XLOC_037945 BX511187.1 coding upstream 86477 32355235 ~ 32358665 (-)
XLOC_037946 CR391943.1 coding upstream 256497 32525255 ~ 32525371 (-)
XLOC_037933 BX530407.2 non-coding downstream 132438 32096331 ~ 32105780 (-)
XLOC_037932 NA non-coding downstream 179884 32057706 ~ 32058334 (-)
XLOC_037951 BX571724.2 non-coding upstream 393556 32662314 ~ 32665462 (-)
XLOC_037956 BX571724.1 non-coding upstream 476330 32745088 ~ 32747794 (-)

Expression


Co-expression Network