XLOC_037941


Basic Information

Item Value
gene id XLOC_037941
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32238733 ~ 32250933 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074994
CTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGATTTTGGCACATGCATGAAGATGGACTCGGTGTGTGGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACAATCAGTGGACCTTCGACACCATATGAGACAcaaaaaaatgccaaaaacagACACCCAAAACCCTACGCATGCTGCGCGACACAGGGGCGTGAACCTGCAGGACCCAGACGCACAGTCCACTCGAAGCTGCTGTGGGAACTAAAGGCCTGTCAACACTCCATCATGGGAGACCACGACACCTTCTCCTCCCTAAAATCCCACCCTTCACCCTTTCACCTCCCAAGACGGAtaaggaaagagaaagaaaggaaTACCAGGAAGAGCTCGAGGAAAACGCCTCACTCGTGCCACAAAGAGATTTTTCAAGGAAGACTTCTGGTGGACGGGGCTGAAAGCGAACGGACGATGGACTCTGTCATGTCTGGCAGTAAATATGGATTCTGTATTACTTTCAAGTCAACAAGAATTTCCACCTCAGTTCATCCTCATTATGCAAGCACCATGTAGAGATAAAGGATTGGAAAAGA
>TCONS_00074995
CTGACCGCCGCTGCGAGCTGCTCAACGGTAGAGACGCCCTGTAGCCAGAAGTGACTCGTGTGTGCGGGGAGAGCCCTGGTTCTTCTTGAGCGACGCTGCTCCATCAAGATGACCCAAGAACAACTTTCCAAAAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGTCTGTTGGTGTTTTCATTTATGAGCTTCTAGCGACACTCCAGTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaagaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGGAGGTGAGGCTTGGCCGGACTGGAGTGGATGAAATAAAATGTCACCCCTTCTTCAAGAACAATCAGTGGACCTTCGACACCATATGAGACA
>TCONS_00074474
CTGTGCTGTGCTTTCCAACATGAAAAGTACCTTTATTTGGGGATGGAGTTCATGCCAGGTGGAGATCTGGTGAATCTGACCAGCAACTATGACATCCCAGAGGAATAGGCTCAATTCTATACGGTAGAAGTGGTGCTGACACTTGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTTGCAGATTTTGGCACATGCATGAAGATGGACTCGACTGGTATGGTACGCTGTGAACACTGCTGTTGGGACACCTGATTACATTTCTCCAGAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGTGAGTGTGACTGGTGGTCTGTTGGTGTTTTCATTTATGAGCTTCTAGTGGGCGACACTCCAGTTCATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCacaagaacatcttaactttCCCAGATGATATTGAAATGTCAAAGGATGGCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAAGTGAGACTGAGAAAATGAAAGtttgatttgagttttttttttttttcttgtaaaattcaGACTCTTACTCGCTTAATATCcccttacttgtttgtttttagaggTTGGCtggtaacatttatttttttattaatttgaatttaactttactgtaaaaaa

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007049 cell cycle biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0032268 regulation of cellular protein metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074994 False 662 lncRNA 0.49 3 32238733 32246696
TCONS_00074995 False 449 lncRNA 0.49 4 32242097 32250933
TCONS_00074474 True 705 lncRNA 0.42 3 32244365 32246831

Neighbor

gene id symbol gene type direction distance location
XLOC_037939 NA coding downstream 3510 32228558 ~ 32235223 (-)
XLOC_037938 NA coding downstream 17060 32215157 ~ 32221673 (-)
XLOC_037937 NA coding downstream 29093 32197328 ~ 32209640 (-)
XLOC_037936 pimr143 coding downstream 47113 32190670 ~ 32191620 (-)
XLOC_037935 sf3b1 coding downstream 61616 32161623 ~ 32177117 (-)
XLOC_037942 NA coding upstream 20133 32271066 ~ 32279187 (-)
XLOC_037943 hspd1 coding upstream 35672 32286605 ~ 32300783 (-)
XLOC_037944 rftn2 coding upstream 61987 32312920 ~ 32343673 (-)
XLOC_037945 BX511187.1 coding upstream 104302 32355235 ~ 32358665 (-)
XLOC_037946 CR391943.1 coding upstream 274322 32525255 ~ 32525371 (-)
XLOC_037933 BX530407.2 non-coding downstream 132953 32096331 ~ 32105780 (-)
XLOC_037932 NA non-coding downstream 180399 32057706 ~ 32058334 (-)
XLOC_037951 BX571724.2 non-coding upstream 411381 32662314 ~ 32665462 (-)
XLOC_037956 BX571724.1 non-coding upstream 494155 32745088 ~ 32747794 (-)

Expression


Co-expression Network