XLOC_037943 (hspd1)


Basic Information

Item Value
gene id XLOC_037943
gene name hspd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32286605 ~ 32300783 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074477
ACACATGTGCGTCGAGTGGAACTGCAGCGGCTCTAAAGCGGCTCCTCTTATATCATTCAGCCTGCTCCGCTGACGGACACGCGCATCCCTTCATTCACCTCCAGATCACTCTGCAAAATGCTGCGTTTACCCAGTGTCATGAGACAGATGAGGCCTGTGTGCAGGGCTCTGGCCCCTCACCTGACCCGTGCATATGCAAAGGATGTGAAGTTTGGAGCAGATGCCCGGGCCCTCATGCTCCAGGGTGTTGACCTGCTGGCTGATGCAGTGGCCGTCACCATGGGGCCAAAGGGTCGCACCGTCATCATTGAGCAGAGCTGGGGAAGCCCTAAAGTTACCAAAGATGGGGTCACAGTTGCTAAAAGTATTGATCTGAAGGACAGGTATAAAAATATCGGAGCCAAGCTGGTTCAGGATGTGGCCAACAACACTAATGAGGAGGCTGGAGACGGCACCACCACCGCTACAGTTCTGGCCCGGGCTGTCGCCAAAGAGGGCTTCGACACCATCAGCAAGGGGGCAAACCCAGTTGAGATCCGTAGAGGAGTCATGATGGCCGTAGAAGAGGTCATCAGTGAACTCAAGAAAAACTCAAAGCCCGTCACGACTCCAGAGGAAATCGCTCAGGTGGCTACTATTTCTGCCAATGGAGACACTGAAGTTGGTAACATCATCTCCAATGCTATGAAGAAAGTCGGTCGTAAGGGTGTCATTACAGTGAAGgatGGCAAAACCCTTCATGATGAGCTTGAGATCATTGAGGGCATGAAGTTTGACCGTGGTTACATTTCTCCTTACTTCATCAACACCGCTAAAGGCCAGAAGTGTGAGTTTCAGGATGCATATGTGCTTCTGAGCGAGAAGAAGATCTCCAGTGTTCAGAGTATTGTTCCTGCTCTGGAAATTGCTAACCAGCATCGCAAACCTCTGGTCATCGTGGCGGAAGATGTGGATGGAGAGGCGCTCAGCACTCTGGTCCTCAACAGGTTGAAGGTTGGCCTGCAGGTCGTGGCGGTGAAGGCTCCAGGATTTGGGGACAACAGGAAAAACCAACTGCAGGACATGGCAGTTTCCACTGGAGGAACCGTGTTTGGTGACGAGGCTATGGGTCTTGCTCTTGAGGATATTCAAGCTCATGACTTTGGCAAGGTCGGCGAGGTCATTGTTACTAAAGACGACACCATGCTCCTGAAAGGCCGCGGTGATGCATCTGCCATTGAGAAGCGCGTCAATGAGATTGCAGAGCAGCTGGAGTCCACAAACAGTGATTATGAGAAGGAGAAACTCAACGAACGACTGGCCAAGCTCTCAGATGGAGTGGCCGTCATTAAGGTCGGAGGAACAAGTGACGTTGAGGTGAATGAGAAGAAAGATCGTGTCACTGATGCCCTGAACGCCACTCGTGCCGCTGTGGAGGAAGGAATTGTGCCCGGAGGAGGATGTGCTCTACTGCGCTGCATCCCTGCCCTCGACAACATCAAGCCAGCCAATGCTGACCAGAAGATCGGTATCGACATCATTCGCAGATCTCTTCGTATTCCTGCAATGACCATTGCTAAGAATGCTGGAGTTGAAGGCTCGCTGGTGGTGGAGAAGATCCTGCAGAGCTCCACAGAGATTGGATATGATGCTATGAACGGAGAATATGTCAATATGGTTGAAAGAGGCATCATTGATCCCACAAAGGTGGTGAGGACGGCACTGCTAGATGCTGCAGGTGTTGCATCTCTCTTGTCCACCGCTGAAGCTGTCGTCACCGAGATCCCCAAGGAGGAGAAGGAAATGCCAGCTGGAGGAATGGGAGGCATGGGTGGAATGGGAGGAATGGGCGGCATGGGCTTCTAAACTGAAATCTGCACTGACTTTAGTAGAAGGGTTGTGGGCAGGGGACATGATTTGCCCCTTCCCTTCAGCTTGGGAAAAAAAAACCTGCCGTGCTGGTGGTCTGAAAATGGAGCAAAAGAAATGGACCTTACGGTCTTTCATCCTTCCACCCACCACTATGTCCAATTTTCTATCTCTACTCGTGGCTGAAGACGATGTCAACCTACTGCTTTAAAGATAAAGCTCCTGATCACGTGACCAGAGAGGGTCTGAACGCCTTCAGTTTGCATCATCAGCGTCTAATGGGAAAAGTGCATTTAACATTTTGCTGTTGTATGAATGTCATTGTGCATATGACTGGTTCTGAATAAGTCCATCTGAAGGGGCTTTAAAAGCCAGACGTTCATGTTAAAATGTGGTAGGAACATTGACCAGTTGTatctatataaaaaagaaaaaaaaagcaaattccACTTGATCAGTTCTTGTTTTGTAAACTGTCTGTCTgtttcatataaaaataaaaccctCGTTTGAGGATTACACAACTTTGACAAAGCATGTGCTTGTTTTGCCTTTCAAATGTTACTTTTAGTTTTCTACATGAAATGGGAATCATTTGATATCTGGTTTAAGGGGCCGTTCTTTCAGTCTTCATCTTCAGTCGCATCTTTCAGTCAAGATTAGAGATTGGTTGAGTGGAGGGAAGGGTGATCTTGTTGCACAGCAGATTTAAACAATATACTGAGTACATGAAAACAACTGGTGTGAAGTATGAATAACTCTTAAGTAGTGCAACAGAATAGTGTTACAAAAATTGCTGTTTGTCATGAGAATTActtgtttgatttgatttgatttttttttttaagctacaACGATGatcattgactttttttttttttccttttgtacaATGTAGTCAttaattctgtattttttatttaataaaatttaacatTCAAAGAGAAA
>TCONS_00074478
AATGCTCTTTAATGCCAAGCTGATATAAAGATAATTGAAATCAGTGAGCTCAAACAGGCAGGGACGTATCGTAGCATAAATGCTGCGTTTACCCAGTGTCATGAGACAGATGAGGCCTGTGTGCAGGGCTCTGGCCCCTCACCTGACCCGTGCATATGCAAAGGATGTGAAGTTTGGAGCAGATGCCCGGGCCCTCATGCTCCAGGGTGTTGACCTGCTGGCTGATGCAGTGGCCGTCACCATGGGGCCAAAGGGTCGCACCGTCATCATTGAGCAGAGCTGGGGAAGCCCTAAAGTTACCAAAGATGGGGTCACAGTTGCTAAAAGTATTGATCTGAAGGACAGGTATAAAAATATCGGAGCCAAGCTGGTTCAGGATGTGGCCAACAACACTAATGAGGAGGCTGGAGACGGCACCACCACCGCTACAGTTCTGGCCCGGGCTGTCGCCAAAGAGGGCTTCGACACCATCAGCAAGGGGGCAAACCCAGTTGAGATCCGTAGAGGAGTCATGATGGCCGTAGAAGAGGTCATCAGTGAACTCAAGAAAAACTCAAAGCCCGTCACGACTCCAGAGGAAATCGCTCAGGTGGCTACTATTTCTGCCAATGGAGACACTGAAGTTGGTAACATCATCTCCAATGCTATGAAGAAAGTCGGTCGTAAGGGTGTCATTACAGTGAAGgatGGCAAAACCCTTCATGATGAGCTTGAGATCATTGAGGGCATGAAGTTTGACCGTGGTTACATTTCTCCTTACTTCATCAACACCGCTAAAGGCCAGAAGTGTGAGTTTCAGGATGCATATGTGCTTCTGAGCGAGAAGAAGATCTCCAGTGTTCAGAGTATTGTTCCTGCTCTGGAAATTGCTAACCAGCATCGCAAACCTCTGGTCATCGTGGCGGAAGATGTGGATGGAGAGGCGCTCAGCACTCTGGTCCTCAACAGGTTGAAGGTTGGCCTGCAGGTCGTGGCGGTGAAGGCTCCAGGATTTGGGGACAACAGGAAAAACCAACTGCAGGACATGGCAGTTTCCACTGGAGGAACCGTGTTTGGTGACGAGGCTATGGGTCTTGCTCTTGAGGATATTCAAGCTCATGACTTTGGCAAGGTCGGCGAGGTCATTGTTACTAAAGACGACACCATGCTCCTGAAAGGCCGCGGTGATGCATCTGCCATTGAGAAGCGCGTCAATGAGATTGCAGAGCAGCTGGAGTCCACAAACAGTGATTATGAGAAGGAGAAACTCAACGAACGACTGGCCAAGCTCTCAGATGGAGTGGCCGTCATTAAGGTCGGAGGAACAAGTGACGTTGAGGTGAATGAGAAGAAAGATCGTGTCACTGATGCCCTGAACGCCACTCGTGCCGCTGTGGAGGAAGGAATTGTGCCCGGAGGAGGATGTGCTCTACTGCGCTGCATCCCTGCCCTCGACAACATCAAGCCAGCCAATGCTGACCAGAAGATCGGTATCGACATCATTCGCAGATCTCTTCGTATTCCTGCAATGACCATTGCTAAGAATGCTGGAGTTGAAGGCTCGCTGGTGGTGGAGAAGATCCTGCAGAGCTCCACAGAGATTGGATATGATGCTATGAACGGAGAATATGTCAATATGGTTGAAAGAGGCATCATTGATCCCACAAAGGTGGTGAGGACGGCACTGCTAGATGCTGCAGGTGTTGCATCTCTCTTGTCCACCGCTGAAGCTGTCGTCACCGAGATCCCCAAGGAGGAGAAGGAAATGCCAGCTGGAGGAATGGGAGGCATGGGTGGAATGGGAGGAATGGGCGGCATGGGCTTCTAAACTGAAATCTGCACTGACTTTAGTAGAAGGGTTGTGGGCAGGGGACATGATTTGCCCCTTCCCTTCAGCTTGGGAAAAAAAAACCTGCCGTGCTGGTGGTCTGAAAATGGAGCAAAAGAAATGGACCTTACGGTCTTTCATCCTTCCACCCACCACTATGTCCAATTTTCTATCTCTACTCGTGGCTGAAGACGATGTCAACCTACTGCTTTAAAGATAAAGCTCCTGATCACGTGACCAGAGAGGGTCTGAACGCCTTCAGTTTGCATCATCAGCGTCTAATGGGAAAAGTGCATTTAACATTTTGCTGTTGTATGAATGTCATTGTGCATATGACTGGTTCTGAATAAGTCCATCTGAAGGGGCTTTAAAAGCCAGACGTTCATGTTAAAATGTGGTAGGAACATTGACCAGTTGTatctatataaaaaagaaaaaaaaa

Function

symbol description
hspd1 Predicted to enable chaperone binding activity. Acts upstream of or within fin regeneration; regulation of cell population proliferation; and regulation of neutrophil chemotaxis. Located in mitochondrial matrix. Is expressed in several structures, including anterior neural keel; digestive system; mesoderm; musculature system; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autistic disorder; glucose intolerance; hereditary spastic paraplegia (multiple); and hypomyelinating leukodystrophy 4. Orthologous to human HSPD1 (heat shock protein family D (Hsp60) member 1).

GO:

id name namespace
GO:0050870 positive regulation of T cell activation biological_process
GO:0042110 T cell activation biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0090022 regulation of neutrophil chemotaxis biological_process
GO:0034514 mitochondrial unfolded protein response biological_process
GO:0006457 protein folding biological_process
GO:0042246 tissue regeneration biological_process
GO:0031101 fin regeneration biological_process
GO:0032727 positive regulation of interferon-alpha production biological_process
GO:0032729 positive regulation of interferon-gamma production biological_process
GO:0032755 positive regulation of interleukin-6 production biological_process
GO:0008637 apoptotic mitochondrial changes biological_process
GO:0042026 protein refolding biological_process
GO:0045041 protein import into mitochondrial intermembrane space biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005759 mitochondrial matrix cellular_component
GO:0005524 ATP binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
ko03018 RNA degradation
ko04212 Longevity regulating pathway - worm
ko05134 Legionellosis
ko05152 Tuberculosis
ko05417 Lipid and atherosclerosis
ko04940 Type I diabetes mellitus
ko03019 Messenger RNA biogenesis
ko03110 Chaperones and folding catalysts
ko03029 Mitochondrial biogenesis
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-021206-1 Predicted to enable chaperone binding activity. Acts upstream of or within fin regeneration; regulation of cell population proliferation; and regulation of neutrophil chemotaxis. Located in mitochondrial matrix. Is expressed in several structures, including anterior neural keel; digestive system; mesoderm; musculature system; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autistic disorder; glucose intolerance; hereditary spastic paraplegia (multiple); and hypomyelinating leukodystrophy 4. Orthologous to human HSPD1 (heat shock protein family D (Hsp60) member 1).

Ensembl:

ensembl_id ENSDARG00000056160

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074477 False 2796 mRNA 0.47 11 32286605 32300783
TCONS_00074478 True 2249 mRNA 0.50 11 32287114 32300611

Neighbor

gene id symbol gene type direction distance location
XLOC_037942 NA coding downstream 7418 32271066 ~ 32279187 (-)
XLOC_037940 NA coding downstream 17847 32238218 ~ 32268758 (-)
XLOC_037941 NA coding downstream 35672 32238733 ~ 32250933 (-)
XLOC_037939 NA coding downstream 51382 32228558 ~ 32235223 (-)
XLOC_037938 NA coding downstream 64932 32215157 ~ 32221673 (-)
XLOC_037944 rftn2 coding upstream 12137 32312920 ~ 32343673 (-)
XLOC_037945 BX511187.1 coding upstream 54452 32355235 ~ 32358665 (-)
XLOC_037946 CR391943.1 coding upstream 224472 32525255 ~ 32525371 (-)
XLOC_037947 satb2 coding upstream 259616 32560399 ~ 32604414 (-)
XLOC_037948 dnajb11 coding upstream 340243 32641026 ~ 32648725 (-)
XLOC_037951 BX571724.2 non-coding upstream 361531 32662314 ~ 32665462 (-)
XLOC_037956 BX571724.1 non-coding upstream 444305 32745088 ~ 32747794 (-)
XLOC_037958 NA non-coding upstream 460279 32761062 ~ 32795884 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000774 hspd1 coding CM030137.1 CM030137.1 3122348 ~ 3133195 (+)