XLOC_037944 (rftn2)


Basic Information

Item Value
gene id XLOC_037944
gene name rftn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32312920 ~ 32343673 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074479
ATTTCAGCACGCTTTCAGCCCGCAACAACTTTGCTTTATTATTTCGCGGCCATTTAGGGAGAGTGAATGTGATTTGGGTTTCTATTGTGGATCTGAATTCCTTTACCTCACATCAACTTCACAAAGAGTTTCAGAAAGTGTACCCTCTCGCAGCAGGATTGGTGATCTTTGCTTGATCACTTAGTTAGACTTGAGCCGTTTTCTTTAAGGGGATCGGGAACGTCATCCTCGGTTCAGCGCCACTCCCAAAGGATTAAATTGTTGGAATATGGAGCAAAGCCACTAAACACAGGAGCAGGAGTCCGAGTGTGCTGGGGATCCCGCTATAATGGGATGTGGACTACGGAAACTGGAGGACCCGGAGGACAGCAGCCCGGGGAAAATCTACTCCACGTTGAAGAGACCACAAGTTGAGACCAAAACAGACTCCGCGTACGAGTATGTGCTGCTAGACTTCAGTCTGGAAGGCAGTCGACCTACTGTGCAGTATCTGTCCTCTCTATGTGAGCTGCCTCATGCCCTCCAGTCCTACTACACCCAGGGCTACGTACTGGCCGCCTTGCATCCCATCATCCTATCTGTGGGACGGACACGCTTTCTGCCCTGCAGCCTGCTGTACCGGGCCATACTGGTTCGGCCACGATCCAGTAGTCACACAGTGCCGATGATTGACAGTTTGCCAGTGTTGCGAGTGGAAGAGTGGCCCCTGCCAGGAGAATCTCTGACCAGCGATACAGTGAGACTCCTCATTGACCGGGTGAACAGTTATGCCAGGGGTGGCGTGAGGTTTGTGGGTTCAGTGCTCCAGCAGGCTGGAGGAGGGGGATGTAATGGTAGAGTGCCCAGTCCCAGAAGGGACTGCCGCTCCCTGCCCCGCACCCCTCCTCGCACACCACCCGGAGACACAGATCTGGAGGGCCGCAGTTACAGCCCAGATCTGAGATTGTTGGTGCTGTTCCACTCTTGGGCTCCGGGTTGTGCCCCGCTGGACTCGTTGGCCTGCTGTTACCACCAGGGTGCCCTGTCCATGCGCGTTTCCAGGAAAGGTCAAGTTGTAAGTGCTCTGGAAGCAGATTGGCTGGAACTGACCGCAGCTTATTACCGCAAGGGCTGGTCATTGGTTGATTCCTTTGTATACTGGGATACCCCTAAAGGAGAGCCAGTGCCCAGGTCTCTAGAGGGTCTGTTTGTCTATGAAGAGAAAAGCACAGCGCCACCTGCCAATGACACTATTGTAGTGGAACAGTGGACTGTTATTGAGGATTCAAATGTGAAGACAGACTATGGGCCTCTGCTGCACACGTTAGCAGAGTTTGGCTGGCTGCTCACCTGTGTTTTGCCCACCCCGATTATTCGCCATGACAGTGAAGGGAATTTGGCCACTAAGCAAGTGGTTTTCCTGCAAAGACCAGTCAAGGGTCATCCGGTACCACAGCACAGCCAGGGTTCGACACGGAGAGAGGTGTCCAGTCGCTCTGTGAGCGGAGGAGTGGACGAGGGGCACGCTGAGCTCTCATCTCCATGCTCAGGCGGGATCGGTGGCTTCCCTGTGTTTGGAGGAGGCTTTCCCAGCTCTCTCTCCCATCTGGATGAGGGAGGATATGAGCCGGACGATGGGGCAGCAGAGGTCACCTGTATGTGAACTCAAAAACTTGCCGTTTAAAGTTCTGAAGCAATGAGCATTGCCCTCCGATTTTCACCAGAACAGAGATTTTGCGTTCTTATATTACAGACAGACTTAGCACTTTTAactttttgtaaattattttttaacaagcCATAATGTATCCTAGAGAACCCCTATTTTTACCGAAAAGCACAATGCGTGTGCAATCGTTCCTGTTTTCAATCAAAATTATCACTGAAAGTCACTGTTATGAGCAAATCCTTTACCCCCCTCCTTATCACGGCGAGTATCCTTCCTCACAGTTTTTGCTGTTCTTTTTCCTGTtccttttttttacttcaaaccAGCTGACAAATCAGTTGTTTGTTTAAACACCTGCGATGGTTCAGCGTGACCAACTCAGGAACTGAGTGTCCAAACAGACTCCTTGTGGGACGCACATTTGTTTGGTGCGcagttttggaaaatatttaccTTTTATGCAGAACTTTCCAAGCCTTGGGTGCCAAAACGTCATCTTGGGAAGCGAAGGGGAATTCTTTCTGCTTTGTATGTGTTTGAGGGAAATGCATGTACTGTAAACCTACAAGCTGGACCTCATCAACTAGCCTGCAAACACTGAATTTGACAGTAGTTTGGTTTATCTGATCTGTGCCGTTGGCTCAGTTGGTGCTAAATTTGTTTGTTAACCTCCTGGGAATTTCTTCACACACACTATCTTAAAGGGAAAGGTTTGCATATTGAGAGACACTTCACAAGGGGACAATGAGCAGGGTACTTTCTTTCTTTAAATGACTATAGTTCTCCCCAAATTAAGTGGTAAGGTTGAATAATGCGGTtggatttttacaatttatttgtttgtaagcTGTAGAATTTTAACCTGAGGTAAGTGTTATACGGCTGATGTTGCCTTGACAATGTTTATCCCTCCTTGAGGAATGGCAGATTAGCATAAGCACATTTTTAGCTTACGAAGCTGCTGTAAATGTTTAAAGTCATTAAGCGATAAAGTTCTTCACATTTATCATTATATTCTAATTTGCCAGATCTGATCAGTGTTATTTACCAGCTTTAGTATTCGTACATGTTCAGACAGTGTTTTGTACTATTTTATTAAACGGGTATTGACCTCATA
>TCONS_00074480
caCAGATTAACTACTGACTTCATTACTAGTAATGGCTCCtgtttgaacattcttcaaaatatcctcattCATGTTCAACAAAGAAAAGAATCCCATTAACGAACgtaattgtcttttttttgtctgtgtgtgtgggtactgtctctttaaatgaaTATCTAGGTCATACACatgcacctattatgcaaaaatccagCAATGAGCTGTGGCTTTATGAGTTCTTATCACCTAATCTAGATGTTATATTGTTGTTTTGGCAGGAGAGCCAGTGCCCAGGTCTCTAGAGGGTCTGTTTGTCTATGAAGAGAAAAGCACAGCGCCACCTGCCAATGACACTATTGTAGTGGAACAGTGGACTGTTATTGAGGATTCAAATGTGAAGACAGACTATGGGCCTCTGCTGCACACGTTAGCAGAGTTTGGCTGGCTGCTCACCTGTGTTTTGCCCACCCCGATTATTCGCCATGACAGTGAAGGGAATTTGGCCACTAAGCAAGTGGTTTTCCTGCAAAGACCAGTCA

Function

symbol description
rftn2 Predicted to be located in plasma membrane. Orthologous to human RFTN2 (raftlin family member 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2760 Predicted to be located in plasma membrane. Orthologous to human RFTN2 (raftlin family member 2).

Ensembl:

ensembl_id ENSDARG00000056078

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074479 False 2765 mRNA 0.48 9 32312920 32343673
TCONS_00074480 True 521 lncRNA 0.42 3 32316139 32316835

Neighbor

gene id symbol gene type direction distance location
XLOC_037943 hspd1 coding downstream 12137 32286605 ~ 32300783 (-)
XLOC_037942 NA coding downstream 33733 32271066 ~ 32279187 (-)
XLOC_037940 NA coding downstream 44162 32238218 ~ 32268758 (-)
XLOC_037941 NA coding downstream 61987 32238733 ~ 32250933 (-)
XLOC_037939 NA coding downstream 77697 32228558 ~ 32235223 (-)
XLOC_037945 BX511187.1 coding upstream 11562 32355235 ~ 32358665 (-)
XLOC_037946 CR391943.1 coding upstream 181582 32525255 ~ 32525371 (-)
XLOC_037947 satb2 coding upstream 216726 32560399 ~ 32604414 (-)
XLOC_037948 dnajb11 coding upstream 297353 32641026 ~ 32648725 (-)
XLOC_037949 gzm3 coding upstream 310881 32654554 ~ 32656656 (-)
XLOC_037938 NA non-coding downstream 91247 32215157 ~ 32221673 (-)
XLOC_037951 BX571724.2 non-coding upstream 318641 32662314 ~ 32665462 (-)
XLOC_037956 BX571724.1 non-coding upstream 401415 32745088 ~ 32747794 (-)
XLOC_037958 NA non-coding upstream 417389 32761062 ~ 32795884 (-)

Expression


Co-expression Network