XLOC_037947 (satb2)


Basic Information

Item Value
gene id XLOC_037947
gene name satb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32560399 ~ 32604414 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074484
ATGGAGCGTGGTGGAGGAGAGAGTCCTCGACTGCGGGACAGTCCCGAGCGACGTGGGAGCAGCAGCCCTGATATCGGCTGCCCTCCACAAAAGCTGGGCCGTCTAGAGCTCAACGGCAGCCCCACTGGTCACCGCAGTCGTCACAACGGGGCCCCACAAAGACCTCTTAGCGGTTTGATGATTCCTGTCTTCTGCGTGGTGGAgcagatggatggagggatgattTCCGATGGAGAGAGCCGAGAGGAACATGCTGAGTTTGTGCTGGTCAGGAAGGACATCCTCTTCACTCAACTGGTGGAGACTGCTCTCCTCGCCCTCGGCTACTCTCACAGTTCTGCAGCCCAGGCTCATGGCATCATTAAGGTGGGCCGCTGGAACCCCCTGCCCATCCATTACCTGACAGATGCTCCAGAGGCAACAGTAGCCGATATGCTGCTGGACGTTTACCACATGGTGACACTGCGCATCCAGCTACAAAGCTTTGCTAAACTGGAGGATCTTCCGTCTGAGCAGTGGAACCACGCAACAGTACGCAACGCCCTCAAAGAACTTCTCAAAGAGATGAACCAGAGCACACTGGCCAAAGAGTGTCCACTTTCACAGAGTATGATCTCCTCGATAGTCAATAGCTCCTACTATGCTAATGTCTCAACTGCCAAGTGCCAAGAGTTTGGTCGCTGGTACAAGaagtacaaaaaaattaaagGCGATTATTTGTGGCAAGGACGGGAGGGCTCAGAAATCAAGGTTGAACGGGACAATATCGCAGACTTCTGTGTATTAGCCCAGCGTCCACCTCCTCACCTCACTGCACTGGGACAACTCGGCCCATTGAACAGCGCTGGCTCCCTGGTAAAAGGCAACTCAGGAGAACCTCAGAATTCAGCTCAGTCTCAGCCTCCACCTCAAGGGCAGCCACAACCCCCATCATCTCTTGGGCAGCTCCATCACAGTCCTCCACTAAGGGCACAGGtgcctcctccacctcctcctgcCGCCCTGCAGCCTCTTTTGGCACCTGGAGGACTTCTCTCACCCCAGCTCAGTCCACAGCTGGTCCGGCAGCAGTTGGCCATGGCTCATCTTATCAACCAGCAGCTGGCCGTCAGCCGCCTCCTGCATCAGCACCCACAGGCTCTTAACCAGCAGTTTCTCAATCACCCACCCATTCCTCGGCCTAGCAAGTCTGGGGGCCCTGGAGAGCCCGGCTCCAACCCCTCGGCTGCAGAAGTGTCCTCTGATATATACCAACTAGTGCGAGATGAGCTGAAAAGGGCCAGTGTCTCACAGGCAGTGTTTGCTCGAGTTGCCTTCAACCGTACACAGGGCCTGTTATCAGAGATATTGCGAAAAGAAGAGGACCCGCGTTCAGCCTCTCAGTCTTTGCTGGTGAACCTCAAAGCAATGCAGAACTTCCTGAACTTACCTGAGAGTGAGAGGGACCGCATTTATCAGGAAGAGCGAGAACGCAGTATGAACCCCCCTGTGAGTCTGCCTCCAAGCACAAACCCCAGTCCTGGGGCCGTCCGCCTCTCTCAGAAGGTGTGGGAGCGCAGCATCGATGAACAGTTAACCCCTGATGCGTGGGCATCTATTTGGAAGAATAAGACCAAAATCACAAACTCGTGCAAGACTCCTAACCCTGACCTTCCTGTGAAACTGGAACCACTGGTCAACATCACCTCAGCCATCTATGACGAAATCCAGCAGGAGATGAAACGGGCCAAAGTGTCTCAGGCGCTTTTCGCCAAGGTGGCAGCCAACAAGAGTCagGGATGGCTGTGTGAGCTGCTTCGCTGGAAAGAGAGTCCCAGCCCAGAGAACAGGACACTCTGGGAGAACCTGTGCACTATCCGTAGGTTTCTGAGCCTTCCACAGACAGACAGGGACATGGTGTACGAGGAAGAGTCCCGTCATCACCACAGCGAACGGCTGCACACTGTACTACACCTGCCCACTGACCCTCAGGCACTTCACAGACAGCCCATGCAGCCACTGAAGGACCACTCTCCTATTCGAGAAGACCCTATTCCCAGTTCTGGAGCTGAAGAGAACCCTCAGGCCAACACAGGTTCTGGAAACAATGGACCGGTTGTCAGTGTCACCAAAAAACCTCGCTCTCGCACCAAGATCTCTCTGGAAGCTCTTGGCATCTTACAGAGCTTTATCCAGGATGTGGGTCTATACCCTGACCAGGAAGCCATACACACTCTGTCAGCCCAACTGGATCTGCCCAAACATACCATTGTTAAGTTCTTTCAGAACCAACGTTATCATGTGAAGCATCATGGACGACTGAAGGAGCTCGGATCGGAGGGCGGCGGTGTAGACGTGGCTGAGTATCGAGACGAGGAGCTGCTTTCCAGTTCAGAGGATGCAGAGTCCAGTGAAGATGGTCACGAGGAGATCTACAGTGGGCATGAGAGTGCCCCGGCTGGAGCAGCCAACTCTGTCTCAACTCCAGCTCTTTCTTCTGTCCAAGATGAAAATAAAGACAAATGCTTGCCTCTGGGAACAGTCAGACccaactctctgcccccatgcaGTTCATCCTCAAGTCCCAGAGATCAAGCAGACTATCAGAGATAA
>TCONS_00074483
ATGGAGCGTGGTGGAGGAGAGAGTCCTCGACTGCGGGACAGTCCCGAGCGACGTGGGAGCAGCAGCCCTGATATCGGCTGCCCTCCACAAAAGCTGGGCCGTCTAGAGCTCAACGGCAGCCCCACTGGTCACCGCAGTCGTCACAACGGGGCCCCACAAAGACCTCTTAGCGGTTTGATGATTCCTGTCTTCTGCGTGGTGGAgcagatggatggagggatgattTCCGATGGAGAGAGCCGAGAGGAACATGCTGAGTTTGTGCTGGTCAGGAAGGACATCCTCTTCACTCAACTGGTGGAGACTGCTCTCCTCGCCCTCGGCTACTCTCACAGTTCTGCAGCCCAGGCTCATGGCATCATTAAGGTGGGCCGCTGGAACCCCCTGCCCATCCATTACCTGACAGATGCTCCAGAGGCAACAGTAGCCGATATGCTGCTGGACGTTTACCACATGGTGACACTGCGCATCCAGCTACAAAGCTTTGCTAAACTGGAGGATCTTCCGTCTGAGCAGTGGAACCACGCAACAGTACGCAACGCCCTCAAAGAACTTCTCAAAGAGATGAACCAGAGCACACTGGCCAAAGAGTGTCCACTTTCACAGAGTATGATCTCCTCGATAGTCAATAGCTCCTACTATGCTAATGTCTCAACTGCCAAGTGCCAAGAGTTTGGTCGCTGGTACAAGaagtacaaaaaaattaaagGCGATTATTTGTGGCAAGGACGGGAGGGCTCAGAAATCAAGGTTGAACGGGACAATATCGCAGACTTCTGTGTATTAGCCCAGCGTCCACCTCCTCACCTCACTGCACTGGGACAACTCGGCCCATTGAACAGCGCTGGCTCCCTGGTAAAAGGCAACTCAGGAGAACCTCAGAATTCAGCTCAGTCTCAGCCTCCACCTCAAGGGCAGCCACAACCCCCATCATCTCTTGGGCAGCTCCATCACAGTCCTCCACTAAGGGCACAGGtgcctcctccacctcctcctgcCGCCCTGCAGCCTCTTTTGGCACCTGGAGGACTTCTCTCACCCCAGCTCAGTCCACAGCTGGTCCGGCAGCAGTTGGCCATGGCTCATCTTATCAACCAGCAGCTGGCCGTCAGCCGCCTCCTGCATCAGCACCCACAGGCTCTTAACCAGCAGTTTCTCAATCACCCACCCATTCCTCGGCCTAGCAAGTCTGGGGGCCCTGGAGAGCCCGGCTCCAACCCCTCGGCTGCAGAAGTGTCCTCTGATATATACCAACTAGTGCGAGATGAGCTGAAAAGGGCCAGTGTCTCACAGGCAGTGTTTGCTCGAGTTGCCTTCAACCGTACACAGGGCCTGTTATCAGAGATATTGCGAAAAGAAGAGGACCCGCGTTCAGCCTCTCAGTCTTTGCTGGTGAACCTCAAAGCAATGCAGAACTTCCTGAACTTACCTGAGAGTGAGAGGGACCGCATTTATCAGGAAGAGCGAGAACGCAGTATGAACCCCCCTGTGAGTCTGCCTCCAAGCACAAACCCCAGTCCTGGGGCCGTCCGCCTCTCTCAGTGCAAGACTCCTAACCCTGACCTTCCTGTGAAACTGGAACCACTGGTCAACATCACCTCAGCCATCTATGACGAAATCCAGCAGGAGATGAAACGGGCCAAAGTGTCTCAGGCGCTTTTCGCCAAGGTGGCAGCCAACAAGAGTCagGGATGGCTGTGTGAGCTGCTTCGCTGGAAAGAGAGTCCCAGCCCAGAGAACAGGACACTCTGGGAGAACCTGTGCACTATCCGTAGGTTTCTGAGCCTTCCACAGACAGACAGGGACATGGTGTACGAGGAAGAGTCCCGTCATCACCACAGCGAACGGCTGCACACTGTACTACACCTGCCCACTGACCCTCAGGCACTTCACAGACAGCCCATGCAGCCACTGAAGGACCACTCTCCTATTCGAGAAGACCCTATTCCCAGTTCTGGAGCTGAAGAGAACCCTCAGGCCAACACAGGTTCTGGAAACAATGGACCGGTTGTCAGTGTCACCAAAAAACCTCGCTCTCGCACCAAGATCTCTCTGGAAGCTCTTGGCATCTTACAGAGCTTTATCCAGGATGTGGGTCTATACCCTGACCAGGAAGCCATACACACTCTGTCAGCCCAACTGGATCTGCCCAAACATACCATTGTTAAGTTCTTTCAGAACCAACGTTATCATGTGAAGCATCATGGACGACTGAAGGAGCTCGGATCGGAGGGCGGCGGTGTAGACGTGGCTGAGTATCGAGACGAGGAGCTGCTTTCCAGTTCAGAGGATGCAGAGTCCAGTGAAGATGGTCACGAGGAGATCTACAGTGGGCATGAGAGTGCCCCGGCTGGAGCAGCCAACTCTGTCTCAACTCCAGCTCTTTCTTCTGTCCAAGATGAAAATAAAGACAAATGCTTGCCTCTGGGAACAGTCAGACccaactctctgcccccatgcaGTTCATCCTCAAGTCCCAGAGATCAAGCAGACTATCAGAGATAA

Function

symbol description
satb2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Predicted to be located in nucleus. Is expressed in fin; head; nervous system; pharyngeal endoderm; and pronephric duct. Human ortholog(s) of this gene implicated in SATB2-associated syndrome. Orthologous to human SATB2 (SATB homeobox 2).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-070912-212 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Predicted to be located in nucleus. Is expressed in fin; head; nervous system; pharyngeal endoderm; and pronephric duct. Human ortholog(s) of this gene implicated in SATB2-associated syndrome. Orthologous to human SATB2 (SATB homeobox 2).

Ensembl:

ensembl_id ENSDARG00000061885

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074484 False 2592 mRNA 0.54 12 32560399 32604414
TCONS_00074483 True 2505 mRNA 0.54 11 32560399 32604414

Neighbor

gene id symbol gene type direction distance location
XLOC_037946 CR391943.1 coding downstream 35028 32525255 ~ 32525371 (-)
XLOC_037945 BX511187.1 coding downstream 201734 32355235 ~ 32358665 (-)
XLOC_037944 rftn2 coding downstream 216726 32312920 ~ 32343673 (-)
XLOC_037943 hspd1 coding downstream 259616 32286605 ~ 32300783 (-)
XLOC_037942 NA coding downstream 281212 32271066 ~ 32279187 (-)
XLOC_037948 dnajb11 coding upstream 36612 32641026 ~ 32648725 (-)
XLOC_037949 gzm3 coding upstream 50140 32654554 ~ 32656656 (-)
XLOC_037950 gzm3.2 coding upstream 53281 32657695 ~ 32663496 (-)
XLOC_037951 BX571724.2 coding upstream 57900 32662314 ~ 32665462 (-)
XLOC_037952 gzm3.3 coding upstream 62755 32667169 ~ 32668928 (-)
XLOC_037940 NA non-coding downstream 291641 32238218 ~ 32268758 (-)
XLOC_037941 NA non-coding downstream 309466 32238733 ~ 32250933 (-)
XLOC_037956 BX571724.1 non-coding upstream 140674 32745088 ~ 32747794 (-)
XLOC_037958 NA non-coding upstream 156648 32761062 ~ 32795884 (-)
XLOC_037959 CT030044.1 non-coding upstream 181003 32785417 ~ 32785537 (-)
XLOC_037964 CT030044.2 non-coding upstream 278877 32883291 ~ 32885181 (-)

Expression


Co-expression Network