XLOC_037949 (gzm3)


Basic Information

Item Value
gene id XLOC_037949
gene name gzm3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32654554 ~ 32656656 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074486
AACAACATTTCACTTTTAATGCGCAGTTGAAGACTGAGCCATGGATCTGTgcacttttcttcttcttcttgctaTCTCTTTGGCTGGTGGGATGGATAGTGGTATTATTGGAGGGAAAGTTGCTAAACCTCATTCAAGACCATACATGGCATTCATACAGAACAAATTTGAGGCATGTGGAGGGATGCTGATCAGAGACGATTACATTCTGACAGCGGCTCACTGTTTGAACAACAATGATCGGAGTCACTTTGAGGTTGTACTTGGAGCCCACAACATCAGCAAACATGAGAAAAGCCAGCAGAGGATTCAAGTAAAAAAACATATCCAGCATCCTATGTTTCTAAACAGCAACAATGAAAAGGACTACAGCTATGATATCATGTTGCTAAAGTTGAAGAACAAAGCTAAGATCAACAAATTTGTTAAAGTTTTGTCTCTTCCTAAAAAAAATGAGAAACTTCCAGAAAATGTCAAATGCTCAATAGCTGGCTGGGGGACGAAAGAATCAAATGGAAATAAGCCATCAGATGTACTGGAGGAAGTCACTGTCAAACTGCAGAACAACCATGAATGTGAAAGAAAATGGCAGCAACATTTTAACCCTGAAAGAATGTTCTGTAGTGTCTCAGATGGGAAACATGCTTTTTGCAGGGGCGATTCAGGAAGTCCTCTTATCTGCAATACTAAACCACAAGCAATTGCTTCATATACTGTGAAAAAAGACTGTTTACATACACATCCTCAGGTTTTCGTAAAAATCTCCTGCTTCCTTCCTTGGATTAAAAAGAATATGgtttaa

Function

symbol description
gzm3 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in asthma; atopic dermatitis; hypertrophic cardiomyopathy; and sarcoidosis. Orthologous to several human genes including GZMB (granzyme B) and GZMH (granzyme H).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-132 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in asthma; atopic dermatitis; hypertrophic cardiomyopathy; and sarcoidosis. Orthologous to several human genes including GZMB (granzyme B) and GZMH (granzyme H).

Ensembl:

ensembl_id ENSDARG00000078451

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074486 True 802 mRNA 0.39 5 32654554 32656656

Neighbor

gene id symbol gene type direction distance location
XLOC_037948 dnajb11 coding downstream 5829 32641026 ~ 32648725 (-)
XLOC_037947 satb2 coding downstream 50140 32560399 ~ 32604414 (-)
XLOC_037946 CR391943.1 coding downstream 129183 32525255 ~ 32525371 (-)
XLOC_037945 BX511187.1 coding downstream 295889 32355235 ~ 32358665 (-)
XLOC_037944 rftn2 coding downstream 310881 32312920 ~ 32343673 (-)
XLOC_037950 gzm3.2 coding upstream 1039 32657695 ~ 32663496 (-)
XLOC_037951 BX571724.2 coding upstream 5658 32662314 ~ 32665462 (-)
XLOC_037952 gzm3.3 coding upstream 10513 32667169 ~ 32668928 (-)
XLOC_037953 gzm3.4 coding upstream 13870 32670526 ~ 32672129 (-)
XLOC_037954 ercc1 coding upstream 18020 32674676 ~ 32684008 (-)
XLOC_037942 NA non-coding downstream 375367 32271066 ~ 32279187 (-)
XLOC_037940 NA non-coding downstream 385796 32238218 ~ 32268758 (-)
XLOC_037956 BX571724.1 non-coding upstream 88432 32745088 ~ 32747794 (-)
XLOC_037958 NA non-coding upstream 104406 32761062 ~ 32795884 (-)
XLOC_037959 CT030044.1 non-coding upstream 128761 32785417 ~ 32785537 (-)
XLOC_037964 CT030044.2 non-coding upstream 226635 32883291 ~ 32885181 (-)

Expression


Co-expression Network