XLOC_037957 (olig2)


Basic Information

Item Value
gene id XLOC_037957
gene name olig2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32751428 ~ 32753535 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074497
GTgccaaacacaaacactgcacgaGTGAACTGGAATAGCCTTACAAGTCAATTCTGCAAAGCCACACACCAGCACGCGCTTGCACCTGCTACCGGGAATATCGACATCCTCGAGAAACTGAGAGCGCACTGAACGCCATGGACTCTGACACGAGCCGAGTGTCCAGCAGACCTTCTTCTCCTGAAGGCGATGATCTTTTTCTGTCCGCCGTCAAGAAGTCCGTGGGTTTCTCCGGCGCCGTCTCCTCCACGCAGAGCGATTCTCCACCGGAGTTAAGAGGTGCAGATCTGCGGGGCATCTCCAGCGCTGAGGAGGACTCAATGGCTCTAAAGATGCTCTCCAAAAAGGACCGTAAACTTCTCTCCGAGAATGAGCTGCAGAGCATGCGCCTAAAGATCAACAGCCGCGAGAGGAAGCGCATGCACGACCTTAACATCGCCATGGACGGGCTCCGGGAGGTCATGCCCTACGCTCACGGGCCGTCTGTGCGCAAGCTCTCTAAAATAGCCACTCTGCTGCTCGCGCGCAACTACATCCTTATGCTGAGCAACTCGCTGGAGGAGATGAAGCGGCTCGTGAGCGAGATCTACGGCGGAGGGAGCGGGGCCCATCACGCCGGTTTCCATCCGTCCAGTTGTGGCACTCTTACGCACGCGGCGGCGGCTCCGTTACCGGGTCACCCCGCTGCTGTCTCGCATTCCTCTCACCCGGTGCACCATCCTCTGCTTCCACCAGCAGTCTCCACCGCAGCATCTCTTTCCGGGACGGGGCTTTCAGCCGTCAGGCCGCATCACGGACTCCTCAAAGCCCCGTCAGCCGGCGCTGGGCCTCTGGGCGCGGGTTTCCAGCACTGGGGTGCGGGGATCCCTTGTCCGTGTAGCATGTGCCAGGTGCCTCCGTCTCACGTTCCCGGTATGAGCGCCGTCAGCATGCCACGGCTGACCAGTGACTCAAAATAAAGTGAACTTTTGTAAAAGAACTTTGAGAAGCCACCAcagacttttatatatatatataaaaaactgtaatatcgtGTTTATGGTTTATGACTAAACAATGTGTTGTGGGAATCAAATAGAGCTGAAGCAAAGAAGAATGGATCAAAGCCACTAACATAGAGTTTTCTAACACTTTAGCATTTCTGTGTATAGATTTAGTTGGAAATGGCAAACCTTCCTTAGCCCTCGACTATAGGACTGAAAGAACAAGTCTAATGTGAAATAGAATTACAGCACAAAGTAAAATAAAGCCGATTCATGCTTTAGTTAAATAGGGCTAAGTAGTTTGATGGGCCActactattaataaaaatgtcCTTGAAAACATAATGGTTGTAAATATGTAGATAGCGTTTGTACAGTTTGAGAGATTTTATATTCCTTCCCCAGTTTATGTTTGGGGCAAGAATTCATTTGCCAAGCGCTCTTTGTAAAGAAGCACCTGTTCATTCCTGCACAATATATTTCTACATTTGCATTTCTTCCCTTCTCCTTACTTCATAATTGATAGTTATTTCTTCTTTCTGCACAAGCTTATCCGTCATTACCGATGCGAAGAATgatcaacttttatttttttataataaagtgcaaaatgctatttatttacttatttcgaTGGTATTTTCAAATTAATGTGCGGTGAATGTTTGAGTCCTaactgttaaataaatgttttaaaatga

Function

symbol description
olig2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development. Predicted to be active in nucleus. Is expressed in several structures, including glioblast; nervous system; neural keel; neural plate; and neural tube. Orthologous to human OLIG2 (oligodendrocyte transcription factor 2).

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001764 neuron migration biological_process
GO:0030182 neuron differentiation biological_process
GO:0042552 myelination biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0048666 neuron development biological_process
GO:0007400 neuroblast fate determination biological_process
GO:0007403 glial cell fate determination biological_process
GO:0021742 abducens nucleus development biological_process
GO:0021754 facial nucleus development biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021778 oligodendrocyte cell fate specification biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4013 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development. Predicted to be active in nucleus. Is expressed in several structures, including glioblast; nervous system; neural keel; neural plate; and neural tube. Orthologous to human OLIG2 (oligodendrocyte transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000040946

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074497 True 1684 mRNA 0.48 2 32751428 32753535

Neighbor

gene id symbol gene type direction distance location
XLOC_037956 BX571724.1 coding downstream 3634 32745088 ~ 32747794 (-)
XLOC_037955 olig1 coding downstream 20941 32728653 ~ 32730487 (-)
XLOC_037954 ercc1 coding downstream 67420 32674676 ~ 32684008 (-)
XLOC_037953 gzm3.4 coding downstream 79299 32670526 ~ 32672129 (-)
XLOC_037952 gzm3.3 coding downstream 82500 32667169 ~ 32668928 (-)
XLOC_037958 NA coding upstream 7527 32761062 ~ 32795884 (-)
XLOC_037959 CT030044.1 coding upstream 31882 32785417 ~ 32785537 (-)
XLOC_037960 gatd3a coding upstream 44281 32797816 ~ 32804953 (-)
XLOC_037961 mxc coding upstream 52153 32805688 ~ 32813177 (-)
XLOC_037962 mxe coding upstream 71104 32824639 ~ 32837860 (-)
XLOC_037951 BX571724.2 non-coding downstream 85966 32662314 ~ 32665462 (-)
XLOC_037946 CR391943.1 non-coding downstream 226057 32525255 ~ 32525371 (-)
XLOC_037945 BX511187.1 non-coding downstream 392763 32355235 ~ 32358665 (-)
XLOC_037942 NA non-coding downstream 472241 32271066 ~ 32279187 (-)
XLOC_037964 CT030044.2 non-coding upstream 129756 32883291 ~ 32885181 (-)
XLOC_037966 NA non-coding upstream 184294 32937829 ~ 32941228 (-)
XLOC_037970 NA non-coding upstream 356669 33110204 ~ 33122114 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_02300395_02301213 OLIG2 coding CI01000009 null 2300109 ~ 2301637 (-)
rainbow trout (Oncorhynchus mykiss) G1815615 LOC106582489 unknown NC_048586.1 CM023240.2 45838750 ~ 45840982 (-)
bowfin (Amia calva) AMCG00014761 olig3 coding CM030128.1 CM030128.1 30093412 ~ 30094212 (+)