XLOC_037960 (gatd3a)


Basic Information

Item Value
gene id XLOC_037960
gene name gatd3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32797816 ~ 32804953 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074499
GCTTTAGAAGAAGAGTATTTTCCAGCGCACTCCTCCATCATGTCCTCTCCACTGCGCACCATGATTTCGCGCCTCTCGCTCTTTCGTCCGGCTCACACCAGATATGCCGCTGCTGCTCACTTTCATGCAACGTCAAACTGCAGTGGCGCAAGAGTCGCTGTTGTGTTGTCTGGATGTGGTGTTTTTGATGGCACTGAAATCCATGAGGCGTCAGCAATCCTGGTGCATCTGAGCCGTGGAGGTGCAGAGGTTCAGATGTTTGCTCCTGATGTATCTCAGATGCATGTAATAGACCATGGCAAAGGTCAGCCTTCGGAGACCGAGTCGAGGAATGTCTTATCTGAATCGGCACGTATCGCCAGGGGCAACATCACTGATCTGGCCAAGCTGAGTGCCAGTAATCACGATGCCATCATCTTCCCTGGTGGTTTTGGTGCAGCTAAAAACCTGTCCACATTTGCCATTGATGGGATGGATTGTGAGGTGAATAAAGAAGTGGAGCGGGTTTTAAAGGACTTCCATAAAGCAGGAAAGCCTATTGGGTTGTGCTGTATTTCTCCTGTGCTGGCTGCTAAAGTTCTCCCTGGTGTAGATGTGACAGTGGGTCATGAGGAGGAGCAAGGTGGGAAGTGGCCATATGCTGGTACCACACAAACCATCACTGCACTGGGAGCCAAACATACTGTGAAAGATGTCACTGAAGCTCATGTGGACCAGAAGAATAAGGTGGTGACGACACCTGCGTTCATGTGTGATACAAAGCTGCACTTGATTTTTGATGGGATCGGTGCCATGGTGAGAGATGTCCTGAAGCTCAGCGGGAAGTGAAAATTCAGCCAGTATATCAGTATCTTTACATTCACTGCATTGAGTTCATCAATCATATAGGATATGTGTAAGACACCATCAATTAAAACATAGTAAACTTAAGTTGCAGTCTTTTGACAGACATTACTAATCAAACGTGTCTGCCTGACATTATTAAATGGTATTTAGCTGAATGTCCAGCAGAGGGCACTCtctgattttttaaatgtttgaaaaaagaaATGTGAAATGAAATAACCTCTAGATTTGTCTGTTGTGAAATATTTCAATTGTATTTgcaatttaatgtaataaatactTGAAATGAATATTAGGTCAAAGTACAACTTACAATGTACCAAAACAGCTTGATGTGCATGTTAATTATATTTAAGtagacactgtgtgtgtgttgaaataTGAAGTTTGAAAGAATAaagaatatataattttgttaaa
>TCONS_00074500
TCTCCACTGCGCACCATGATTTCGCGCCTCTCGCTCTTTCGTCCGGCTCACACCAGATATGCCGCTGCTGCTCACTTTCATGCAACGTCAAACTGCAGTGGCGCAAGAGTCGCTGTTGTGTTGTCTGGATGTGGTGTTTTTGATGGCACTGAAATCCATGAGGCGTCAGCAATCCTGGTGCATCTGAGCCGTGGAGGTGCAGAGGTTCAGATGTTTGCTCCTGATGTATCTCAGATGCATGTAATAGACCATGGCAAAGGTCAGCCTTCGGAGACCGAGTCGAGGAATGTCTTATCTGAATCGGCACGTATCGCCAGGGGCAACATCACTGATCTGGCCAAGCTGAGTGCCAGTAATCACGATGCCATCATCTTCCCTGGTGGTTTTGGTGCAGCTAAAAACCTGTGAGTTACAGTACTTCTTTTCATAAACAGGTGGTATATCATCATTTTAATAGTGTACAGTGCACACCACCAATGCTACAACTTTAAAAAATTGGCATTCAGTGTcgccagatatagctgacttaattatttaatttaattttaatttatttaaatctaatttaagCTAGTTCCTCAAACGGTCATAATGTTTTAACtatacagcaaccaacaccagctGTCACAGAACCACAAAATAACTGTATCACATCGAAACACTGCCTCCTCCTACCAACACACTGAACTTGTTatgtagattacactacctacTGTATTAGCGTATGGTTTCCTTTTGAAGTTTGTCCCATTtggcattttaaattcttttgattAGATGCTGCTattcaatcagacaacgcttctgtttgttgttgttgttaatgtccattgcagaaaaaaatgatcgatgaaagtgtcatgataa

Function

symbol description
gatd3a Predicted to be active in mitochondrion. Is expressed in alar plate midbrain region; digestive system; head; optic tectum; and optic vesicle. Orthologous to human GATD3 (glutamine amidotransferase class 1 domain containing 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-147 Predicted to be active in mitochondrion. Is expressed in alar plate midbrain region; digestive system; head; optic tectum; and optic vesicle. Orthologous to human GATD3 (glutamine amidotransferase class 1 domain containing 3).

Ensembl:

ensembl_id ENSDARG00000020618

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074499 False 1266 mRNA 0.43 7 32797816 32804953
TCONS_00074500 True 867 lncRNA 0.42 4 32801738 32804908

Neighbor

gene id symbol gene type direction distance location
XLOC_037958 NA coding downstream 1932 32761062 ~ 32795884 (-)
XLOC_037959 CT030044.1 coding downstream 12279 32785417 ~ 32785537 (-)
XLOC_037957 olig2 coding downstream 44281 32751428 ~ 32753535 (-)
XLOC_037956 BX571724.1 coding downstream 50022 32745088 ~ 32747794 (-)
XLOC_037955 olig1 coding downstream 67329 32728653 ~ 32730487 (-)
XLOC_037961 mxc coding upstream 735 32805688 ~ 32813177 (-)
XLOC_037962 mxe coding upstream 19686 32824639 ~ 32837860 (-)
XLOC_037963 hpxa coding upstream 35161 32840114 ~ 32847642 (-)
XLOC_037964 CT030044.2 coding upstream 78338 32883291 ~ 32885181 (-)
XLOC_037965 fam160a2 coding upstream 90050 32895003 ~ 32912638 (-)
XLOC_037951 BX571724.2 non-coding downstream 132354 32662314 ~ 32665462 (-)
XLOC_037946 CR391943.1 non-coding downstream 272445 32525255 ~ 32525371 (-)
XLOC_037966 NA non-coding upstream 132876 32937829 ~ 32941228 (-)
XLOC_037970 NA non-coding upstream 305251 33110204 ~ 33122114 (-)
XLOC_037973 NA non-coding upstream 372695 33177648 ~ 33179016 (-)
XLOC_037974 NA non-coding upstream 396562 33201515 ~ 33202904 (-)

Expression


Co-expression Network