XLOC_037963 (hpxa)


Basic Information

Item Value
gene id XLOC_037963
gene name hpxa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32840114 ~ 32847642 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074503
TGCATTTGTACGTGTGTTATTAAGTGTGGGCACGTAACCGAATGTCCCTTTCTATGCTCTATGCAAACTGTGAGTGTACGTGTCATGTCCCGCGTGCCTGCAGAATCCCAGCAGTCCTCAGTGGAGTATATAAACTGCGGGACATCAGGTTGTGCTTCACCTACTCCAGTTGAGCTCTGTCTCACCAGAGAACCTGCTGACCATGAGGCTCATTCAAGCGCTTTCTCTGTGTCTGGCTCTCTCTCTGAGCCTTGCTGCTCCACCGCAACATAAAGAGGATCATTCTCATAAAGGCAAACCTGGTGGTGAAGGACACAAGCATGAGTTGCACCACGGTGCTCAGCTTGACCGCTGTAAAGGAATAGAGTTTGATGCAGTCGCCGTGAACGAGGAGGGAGTTCCTTATTTCTTCAAGGGTGACCACCTGTTCAAGGGTTTCCATGGCAAGGCTGAGCTGTCCAATAAAACCTTCCCTGAACTGGACGACCATCATCATTTGGGACATGTGGATGCTGCGTTCCGCATGCACTCTGAGGACAGCCCAGACCACCACGACCACCAGTTCTTTTTCTTGGACAACATGGTCTTCAGCTATTTCAAGCACAAGCTGGAGAAGGACTATCCCAAACTTATCTCTGCGGTTTTCCCTGGAATCCCTGATCATTTGGATGCTGCAGTGGAGTGTCCCAAGCCAGACTGTCCTAACGACACTGTGATCTTTTTCAAAGGTGATGAGATCTACCACTTTAACATGCACACCAAGAAGGTTGACGAGAAGGAATTCAAAAGCATGCCCAACTGCACAGGAGCCTTCCGTTACATGGGCCATTATTACTGCTTCCATGGACATCAGTTCTCCAAGTTTGACCCGATGACAGGAGAAGTCCATGGCAAATATCCAAAAGAGGCCCGTGATTACTTCATGAGGTGCCCTCACTTTGGGAGTAAGACCACTGACGACCATATTGAGAGAGAACAGTGCAGTCGTGTGCACTTGGATGCTATAACATCTGACGACGCTGGCAACATATATGCTTTCAGAGgtCACCACTTCCTCAGCATAACTGGTGATAAGTTTCATTCTGACACAATCGAGAGTGAATTCAAGGAACTGCACAGTGAAGTGGATTCAGTCTTCTCCTATGATGGCCATTTCTACATGATCAAGGACAATGATGTGTTTGTGTACAAAGTTGgaaagccacacacacacctggaggGGTACCCTAAACCCTTGAAGGATGTGCTGGGAATTGAGGGCCCCGTAGATGCTGCCTTTGTGTGCGAAGATCATCATGTTGTTCACATCATCAAAGGTCAGTCAATCTATGATGTTGACTTGAAAGCCACCCCACGTAAGCTTGTGAAGGAAGGAACCATTACACAGTTCAAAAGGATTGATGCAGCAATGTGCGGACCCAAGGGTGTGACGGTTGTCATCGGTAACCATTTCTACAATTATGACAGTGTCCAAGTTATGCTGATGGCCAAAATCATGCCTGAACAGCAGAAGGTGTCTCAGCAGCTGTTTGGCTGTGACCACTAGAGGGCTGCAGGCTGAGAAAGGAAGGAAACTGCTGTGCAGTGATACAGTCTGTACAGACTTGCATTTCCAAGCAGTAACATATCCATATTCCTCTAACTCTTGTCACTTTGATCTCAAAAGTTTATTCCTACCTCTGGTGCTCTGCTCAAATCATCTAGCTCTTTGCAAACATGTGAATATGAATACAATTCTGACTTTTGCTGCCATTGCATGGCGTGCAGACTAATGTACATGTGTGTTACCACAGAGCCTGTTGTTTGAAGCTTTATCTAAGGACTTGCTTATTTCACCTTTGTCTGCTTGCTGTGTGGTTAATAAATAGTCTTATCTATTACATGTGTCTGTTTTTAATGCAGTGTATTGTGATATTAGCTATATAATAAGCTTATATGTTTAGggggaacatttaaaaaaaaaaaactggataatGAAAAGTCTATATACtatccagcaagcattttttttgcttttataagatgtctaatagacgtttaAACATAGTCGTATTGGCTGAAACaaagctaaacttgggctgtcagttaaaatctaatagacgtctaagaataggccaaaacaagactagtcatcaaataaacagaaatgaatgactacacatataatgTCTGTCTAATccgtctatttgatgactagtctagttttgggctattcttagatgtctaatagatttttactgacagcccaaatgtagcattgttttagccaagctgtctatgtttagatgtctattagacgtctattagacacaAAATATCCTACTGTCACTGTATGAAACAAGCTTCTTAAGGCATCCAAAGCTTACACATTTACTCTGAACAGCCTAAATTACATAATTCAGCTTTTTAGGCTGATGTTTAATCACATTTAACAAGATTTCTTTGCTTTCATTCTTATGAAAAACGTTGTTTTCATTCTAGGCATAATGACAGTTATAACGAAGAACCATTTTTTAATGCCCGATATACAATACGATACAGAGTCAATGACTGACTTAAAgttgttgtcatttttttgctttaaaatgtctaCGATTTGTTCAAGACAAACTGTTCAAAATATGTTGCATTTCTGAAATTTCTGCCATGTGGGAcgtttcaaataaaatgaaacttatgAGTAAAGCGAAA
>TCONS_00074504
taactttgctggacaccggccctccaggacagagtttggacatgcctgactTAAGCGATGCAGAAAGCAATGCCACTTTATGAAGCTTACATCAAGGTGTGTGTGTCATGATAAGCTGTCTTTGGAATAAATAAAGGTAGTCTATTATGGTTTTCTAGTGTTTGGTGAAGATACAAACTAAAACGAAACCCAAACAGCTTCATTTATATATTCTGTTTAtatgtactttttattttatacagttttgTTTTCAATTATGCAAGTTTTTGCTCCATTTCAGACCCATTTTTGTTTAGACAATGCTGTTTTTATCCGTCAAAATTTGcatctctttttcttttcttgtgtaatatattataaaataatgtacTTTAGTTGAAAAGTAGTCTGTCTTTTTCTCAAGATCATGTCATTTGAAAAATTATCCTACACCTGTGTTAACTGGTCTTTCACTAATACTTTTACCCAAAGGTGACCACCTGTTCAAGGGTTTCCATGGCAAGGCTGAGCTGTCCAATAAAACCTTCCCTGAACTGGACGACCATCATCATTTGGGACATGTGGATGCTGCGTTCCGCATGCACTCTGAGGACAGCCCAGACCACCACGACCACCAGTTCTTTTTCTTGGACAACATGGTCTTCAGCTATTTCAAGCACAAGCTGGAGAAGGACTATCCCAAACTTATCTCTGCGGTTTTCCCTGGAATCCCTGATCATTTGGATGCTGCAGTGGAGTGTCCCAAGCCAGACTGTCCTAACGACACTGTGAT
>TCONS_00074505
ACCTACTCCAGTTGAGCTCTGTCTCACCAGAGAACCTGCTGACCATGAGGCTCATTCAAGCGCTTTCTCTGTGTCTGGCTCTCTCTCTGAGCCTTGCTGCTCCACCGCAACATAAAGAGGATCATTCTCATAAAGGCAAACCTGGTGGTGAAGGACACAAGCATGAGTTGCACCACGGTGCTCAGCTTGACCGCTGTAAAGGAATAGAGTTTGATGCAGTCGCCGTGAACGAGGAGGGAGTTCCTTATTTCTTCAAGGGTGAGAAATTTTcagttaaaacaaataagatgataaataaaaataacaaaataaaggcAAATAATATGCAGGAAGTAATTTGATCTTGGTGACatcctacattgtaaaaagcgaatagaaatgaagatgaaaaACATGAGCTATCAATCCCATCCTAGTGTACTCCTGCCTTAAAACAGAACCTGATTAGCCTTGACTCGTTGTTTCCCTACACACTACTCCCACCCAACACATCTGAGATCCAGTTTCTATTGGTTTAACTtccaatgttttcaaagtgtccTACAAACAAGGGCATAGATATGCACTTGTCATTGATGGGGACGGgtgaatatataaaaaattctgACTGAGGGAAGTTTAATGTACTGGCCAGATTGCTATTTGCCTgtaggcttcagtttttaatttaaaacaggttttaacagattt

Function

symbol description
hpxa Predicted to enable heme transmembrane transporter activity and metal ion binding activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blood; liver; and male organism. Orthologous to human HPX (hemopexin).

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0042168 heme metabolic process biological_process
GO:0015886 heme transport biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG:

id description
ko00230 Purine metabolism

ZFIN:

id description
ZDB-GENE-030131-5773 Predicted to enable heme transmembrane transporter activity and metal ion binding activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blood; liver; and male organism. Orthologous to human HPX (hemopexin).

Ensembl:

ensembl_id ENSDARG00000012609

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074503 False 2691 mRNA 0.42 10 32840114 32847642
TCONS_00074504 False 772 lncRNA 0.40 2 32844013 32844887
TCONS_00074505 True 690 lncRNA 0.41 3 32846154 32847484

Neighbor

gene id symbol gene type direction distance location
XLOC_037962 mxe coding downstream 2254 32824639 ~ 32837860 (-)
XLOC_037961 mxc coding downstream 26937 32805688 ~ 32813177 (-)
XLOC_037960 gatd3a coding downstream 35161 32797816 ~ 32804953 (-)
XLOC_037958 NA coding downstream 44230 32761062 ~ 32795884 (-)
XLOC_037959 CT030044.1 coding downstream 54577 32785417 ~ 32785537 (-)
XLOC_037964 CT030044.2 coding upstream 35649 32883291 ~ 32885181 (-)
XLOC_037965 fam160a2 coding upstream 47361 32895003 ~ 32912638 (-)
XLOC_037966 NA coding upstream 90187 32937829 ~ 32941228 (-)
XLOC_037967 si:ch211-125e6.5 coding upstream 213922 33061564 ~ 33063083 (-)
XLOC_037968 zgc:172053 coding upstream 232796 33080438 ~ 33081978 (-)
XLOC_037956 BX571724.1 non-coding downstream 92320 32745088 ~ 32747794 (-)
XLOC_037951 BX571724.2 non-coding downstream 174652 32662314 ~ 32665462 (-)
XLOC_037946 CR391943.1 non-coding downstream 314743 32525255 ~ 32525371 (-)
XLOC_037970 NA non-coding upstream 262562 33110204 ~ 33122114 (-)
XLOC_037973 NA non-coding upstream 330006 33177648 ~ 33179016 (-)
XLOC_037974 NA non-coding upstream 353873 33201515 ~ 33202904 (-)

Expression


Co-expression Network