XLOC_037968 (zgc:172053)


Basic Information

Item Value
gene id XLOC_037968
gene name zgc:172053
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33080438 ~ 33081978 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074510
CACGTAACAGCATAAAAGCAGGACTCTTTCTGGAACTTCACTAACTCTTCAATCATCTGAACACTAAGGTTCATCATGGCAATGCTGAGAAATCTTCTGCTTCTTTCCGTCATGTTCTCCCTGGGGAATGCAGGAATTGGAACATGTCAATGTCCCTATGGATGGTCAAAATTTGGAGTCAAATGCTACAGGTTCATCTCTCAGTCAGTTACCTGGGCCACAGCAGAGAAAAACTGTCAAAGTCTTGGAGCCAATCTTGCTTCTGTGCATAGTAAAGCGGAAAATGATTTTCTACTGAGTCTGATACCTAGTTCCTCCACACGCTGCTGGATTGGTGGCCACGATGGTGAAAATGAAGGAAGGTGGCTGTGGACTGATGGATCTGTGATTGATTACAACAACTGGTGCGCTACAGAGCCTAACAACCAGAATGTTGAGAACTGCATGGAGATGCAGTGGACCGTAAACCGCTGCTGGAACGATCAGGCCTGTTCAACCTCAATGGGCTATATGTGTGCTGCAAACCTGTGAGATCAAATGCAGTCATCCTGCTTCACAGTTACATTGATTTtactacattttcttttttcaatgaTCTCTTTACAAAAATGTTTCTCTGAAATTAAAAATCACCTGAATATCTTCTCAATACCTTCTCTGTAACACTTTTCAGATCAATAAAAGCAAAGCAAATAG
>TCONS_00074511
TCAGGTTCATCATGGCAATGCTGAGAAATCTTCTGCTTCTTTCCGTCATGTTCTCCCTGGGGAATGCAGGAATTGGAACATGTCAATGTCCCTATGGATGGTCAAAATTTGGAGTCAAATGCTACAGGTTCATCTCTCAGTCAGTTACCTGGGCCACAGCAGAGAAAAACTGTCAAAGTCTTGGAGCCAATCTTGCTTCTGTGCATAGTAAAGCGGAAAATGATTTTCTACTGAGTCTGATACCTAGTTCCTCCACACGCTGCTGGATTGGTGGCCACGATGGTGAAAATGAAGGAAGGTGGCTGTGGACTGATGGATCTGTGATTGATTACAACAACTGGTGCGCTACAGAGCCTAACAACCAGAATGTTGAGAACTGCATGGAGATGCAGTGGACCGTAAACCGCTGCTGGAACGATCAGGCCTGTTCAACCTCAATGGGCTATATGTGTGCTGCAAACCTGTGAGATCAAATGCAGTCATCCTGCTTCACAGTTACATTGATTTtactacattttcttttttcaatgaTCTCTTTACAAAAATGTTTCTCTGAAATTAAAAATCACCTGAATATCTTCTCAATACCTTCTCTGTAACACTTTTCAGATCAATAAAAGCAAAGCAAAT

Function

symbol description
zgc:172053 Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-25 Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

Ensembl:

ensembl_id ENSDARG00000038321

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074510 False 696 mRNA 0.42 6 33080438 33081978
TCONS_00074511 True 630 mRNA 0.42 5 33080440 33081781

Neighbor

gene id symbol gene type direction distance location
XLOC_037967 si:ch211-125e6.5 coding downstream 17355 33061564 ~ 33063083 (-)
XLOC_037966 NA coding downstream 139210 32937829 ~ 32941228 (-)
XLOC_037965 fam160a2 coding downstream 167800 32895003 ~ 32912638 (-)
XLOC_037964 CT030044.2 coding downstream 195257 32883291 ~ 32885181 (-)
XLOC_037963 hpxa coding downstream 232796 32840114 ~ 32847642 (-)
XLOC_037969 casq2 coding upstream 15311 33097289 ~ 33107237 (-)
XLOC_037970 NA coding upstream 28226 33110204 ~ 33122114 (-)
XLOC_037971 si:ch211-125e6.8 coding upstream 33948 33115926 ~ 33121673 (-)
XLOC_037972 slc5a3b coding upstream 52904 33134882 ~ 33136990 (-)
XLOC_037973 NA coding upstream 95670 33177648 ~ 33179016 (-)
XLOC_037958 NA non-coding downstream 284554 32761062 ~ 32795884 (-)
XLOC_037959 CT030044.1 non-coding downstream 294901 32785417 ~ 32785537 (-)
XLOC_037956 BX571724.1 non-coding downstream 332644 32745088 ~ 32747794 (-)
XLOC_037974 NA non-coding upstream 119537 33201515 ~ 33202904 (-)
XLOC_037975 BX545856.1 non-coding upstream 165224 33247202 ~ 33251006 (-)
XLOC_037977 NA non-coding upstream 274673 33356651 ~ 33359044 (-)

Expression


Co-expression Network