XLOC_037971 (si:ch211-125e6.8)


Basic Information

Item Value
gene id XLOC_037971
gene name si:ch211-125e6.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33115926 ~ 33121673 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074513
GTGAAGAGGACAAGTGAAGAGgtgtTTTATGGTTGAAAAAGACCAGGCTGAAATCAATGCCTTCCGTAAGGTGTTTAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAATGCAAGCAGTAACTTGTTGGCTGTCAATATCTGAATCTGGTGTGAGTGGACCTGAAAAGGCAGATTCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGCACAAGAATTTAAGGAAAAGGCTGAGATGTTTCACTGCCAGTTTAGGAACTTCAAATATGTCTGCAAGTACTTCAGGAACAACTTGGAGACAATTGGTCATCTGTGGTCTAACTTTGGAAGATGCTATAAAAAGAGACTCTGACGCAAACAgggagactggtctgaaatacaTGATACCCCCATGAAAAAcagaagtgttggcaggtgtgcttaccagtttaatatttgatctgctatagttagaaatcagactgttatatcttTTAAgcgtaacgcctgtttcacaccgcaagcgtcagcggtgCGTGTTTTtttggcgtccatgttaacagattacaGCTTTCATACCgtacgcagaagcagcagtgcagcgatagtttcggcgctgggtctatttttgacgcactgctcacgctcaattaaagtgacagtgcattgataatgacctaaatacattgaatgacagtaaaaagtaacaATTTTACTCAATAAATGCGTCAATAATATCAACTGAtgtatatatagtcaatcaaatgaacttaaaccattaaaaactgcaacaaacctTTATTtcggcccgaactacaaaaccaatagttaaacaattttagtatcagttttctTGGCGAGGGGAAGTGATTTACGGGAATTGTAGTCCATAgcaaagtgtattgtgggtagtgtagttcgacatgCATACTGGATGATGTGAACTCGCTGTGTGCTGTGCTGCTCAAGCAGAGGAAGAAAGCTTTATTCGGCTTTGCTTTATGTTCGCTCAAGTTATTTCACCTGgtagctgtttgcactgtgaacctgacaacacgaaaataagtaaaagaagggcATGCATTG
>TCONS_00074514
acacacacacccacgcgcAGGCAACTGCCATTTTCACCAGTGAAGAGGACAAGTGAAGAGGACAAGTGAAGAGgtgtTTTATGGTTGAAAAAGACCAGGCTGAAATCAATGCCTTCCGTAAGGTGTTTAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAATGCAAGCAGTAACTTGTTGGCTGTCAATATCTGAATCTGGTGTGAGTGGACCTGAAAAGGCAGATTCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGCACAAGAATTTAAGGAAAAGGCTGAGATGTTTCACTGCCAGTTTAGGAACTTCAAATATGTCTGCAAGTACTTCAGGAACAACTTGGAGACAATTGGTCATCTGTGGTCTAACTTTGGAAGATGCTATAAAAAGAGACTCTGACGCAAACAgggagactggtctgaaatacaTGATACCCCCATGAAAAAcagaagtgttggcaggtgtgcttaccagtttaatatttgatctgctatagttagaaatcagactgttatatcttTTAAgcgtaacgcctgtttcacaccgcaagcgtcagcggtgCGTGTTTTtttggcgtccatgttaacagattacaGCTTTCATACCgtacgcagcagcagcgcgtcagagcgaggtgtgagcgtcgctgaagcagcagtgcagcgatagtttcggcgctgggtctatttttgacgcactgctcacgctcaattaaagtgacagtgcattgataatgacctaaatacattgaatgacagtaaaaagtaacaATTTTACTCAATAAATGCGTCAATAATATCAACTGAtgtatatatagtcaatcaaatgaacttaaaccattaaaaactgcaacaaacctTTATTtcggcccgaactacaaaaccaatagttaaacaattttagtatcagttttctTGGCGAGGGGAAGTGATTTACGGGAATTGTAGTCCATAgcaaagtgtattgtgggtagtgtagttcgacatgCATACTGG
>TCONS_00074515
gtgtTTTATGGTTGAAAAAGACCAGGCTGAAATCAATGCCTTCCGTAAGGTGTTTAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAATGCAAGCAGTAACTTGTTGGCTGTCAATATCTGAATCTGGTGTGAGTGGACCTGAAAAGGCAGATTCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGTGTGTTGCTATTTGTTTAatagtgctttcacacctacacttctgtttcagaacctgtctcgtttggccagttagcgcggttcgtttggcatatgtaaacAAGGCAATTGCGCTCTAttccacgccaaagtaatcgctccgagaccgcCTAAGTGAGGTAGTCTCGGCTCGAtagaaacgaaccctggagcggttcgattgcagtgagaaagagttccgatccgagcgcggttatatcacagtgttttatggatatgtaataggcatacggctatatgaagagagaattatgagtagggtggaaAGTTTCACGGGTCTCTGGATGCCCGAAAACGAGTGATGacctcccggtaatctcgcgtctccctcctggtcctcaaataggacccttctcacccctccccactgcatcTCTCCTCCGACATGTCGCGCGTGCGCGCCTTGTCAaccaccaccaaaccaccacctccccctgacagctgagcggaacgctgc
>TCONS_00075395
tcagccaatcaaacgttATTACGTCATCATTATGAGCCTCCTGCAGAGTCCGCCAAAAACgcaaattcaaaaaagaaaacacacacacacacacacccacgcgcAGGCAACTGCCATTTTCACCAGTGAAGAGGACAAGTGAAGAGGACAAGTGAAGAGgtgtTTTATGGTTGAAAAAGACCAGGCTGAAATCAATGCCTTCCGTAAGGTGTTTAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAAC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-42 No description available

Ensembl:

ensembl_id ENSDARG00000094518

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074513 False 1086 mRNA 0.40 5 33115926 33121535
TCONS_00074514 False 1021 mRNA 0.42 4 33116078 33121587
TCONS_00074515 False 703 lncRNA 0.49 2 33118614 33119756
TCONS_00075395 True 252 lncRNA 0.44 3 33119224 33121673

Neighbor

gene id symbol gene type direction distance location
XLOC_037969 casq2 coding downstream 8689 33097289 ~ 33107237 (-)
XLOC_037968 zgc:172053 coding downstream 33948 33080438 ~ 33081978 (-)
XLOC_037967 si:ch211-125e6.5 coding downstream 52843 33061564 ~ 33063083 (-)
XLOC_037966 NA coding downstream 174698 32937829 ~ 32941228 (-)
XLOC_037965 fam160a2 coding downstream 203288 32895003 ~ 32912638 (-)
XLOC_037972 slc5a3b coding upstream 13209 33134882 ~ 33136990 (-)
XLOC_037973 NA coding upstream 55975 33177648 ~ 33179016 (-)
XLOC_037974 NA coding upstream 79842 33201515 ~ 33202904 (-)
XLOC_037975 BX545856.1 coding upstream 125529 33247202 ~ 33251006 (-)
XLOC_037976 rpl8 coding upstream 201431 33323104 ~ 33329787 (-)
XLOC_037964 CT030044.2 non-coding downstream 230745 32883291 ~ 32885181 (-)
XLOC_037958 NA non-coding downstream 320042 32761062 ~ 32795884 (-)
XLOC_037959 CT030044.1 non-coding downstream 330389 32785417 ~ 32785537 (-)
XLOC_037956 BX571724.1 non-coding downstream 368132 32745088 ~ 32747794 (-)
XLOC_037977 NA non-coding upstream 234978 33356651 ~ 33359044 (-)
XLOC_037984 dre-mir-221 non-coding upstream 799259 33920932 ~ 33921024 (-)

Expression


Co-expression Network