XLOC_037978 (caska)


Basic Information

Item Value
gene id XLOC_037978
gene name caska
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33366683 ~ 33608427 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074526
gGGACCTTTTAGTGTGGTACGAAGATGCATCAACAGAGAGACGGGCCAACAGTTTGCCGTGAAGATTGTGGATGTGGCCAAATTCACCTCCAGCCCTGGCCTCAGCACAGAAGACCTGAAGAGAGAAGCCAGTATCTGCCACATGCTGAAACATCCTCATATAGTGGAGCTTCTAGAGACCTACAGCTCTGATGGGATGCTCTACATGGTGTTTGAGTTCATGGATGGAGCAGATCTCTGCTTTGAGATTGTGAAGAGAGCAGACGCTGGCTTTGTTTACAGTGAAGCGGTAGCCAGTCACTACATGAGACAGATCCTAGAGGCGCTGCGGTATTGCCATGACAACAACATCATTCACCGGGATGTGAAGcCTCATTGTGTGCTGCTGGCATCAAAGGAGAACTCTGCTCCAGTGAAACTTGGTGGCTTTGGTGTTGCTATACAGCTGGGAGAGTCCGGATTAGTGGCTGGAGGCAGAGTGGGCACACCACACTTCATGGCCCCTGAAGTGGTGAAAAGAGAACCTTATGGGAAACCTGTGGACGTTTGGGGCTGTGGAGTCATTCTCTTCATTCTGTTGAGTGGCTGCTTGCCCTTCTATGGCACCAAAGAGCGCCTCTTCGAAGCAATCATTAAAGGAAAATACAAGGTAATGAACCCTCGGCAGTGGGGCCACATCTCAGAGAGTGCCAAAGATCTGGTGCGCCGTATGCTGATGCTGGACCCTGCAGAGAGGATCACAGTCTATGAAGCTCTCAACCACCCCTGGCTGAAGAGAGACCGCTATGCCTACAAGATCCACCTTCCTGAGACCGTCGAACAGCTGAGGAAGTTCAATGCCAGGAGGAAACTAAAAGGTGCTGTGCTCGCTGCAGTCTCCAGTCACAAGTTCAACTCTTTCTATGGCGACCCACCTGAAGAACTGCCTGACTTCTCTGAGGACCCTACTTCCTCAGGAGCTGTATCACAAGTGCTGGACAGTTTGGAGGAGATCCATGCGCTCACAGACTGCAGTGAGAAAGATCTAGACTTTCTACACAGCGTCTTCCAGGACCATCACCTTCACACATTGCTTGATcTGTATGACAAGATAAACACCAAGTCGTCACCGCAAATCAGGAATCCTTCGAGTGACGCAGTTCAGAGAGCCAAAGAGGTACTGGAGGAGATTTCATGCTACCCGGAGAATACAGATGCTAAAGAACTGAGACGGATCCTAACTCAGCCTCATTTCATGGCCTTACTTCAAACTCATGATGTTGTGGCACATGAGGTGTACAGTGACGATGCAATGAGGGTCACCCCTCCCCCCACATCGCCATACCTCAACGGAGACTCACCAGAAAGCACGAACGGAGACATGGACATCGAAAACGTCACACGAGTGCGTCTTGTTCAGTTCCAAAAGAACACAGATGAACCAATGGGCAtcacattgaaaatgaatgacctGAACCACTGCATCGTAGCAAGAATAATGCATGGAGGAATGATTCACAGACAAGGAACTTTACACATTGGAGACGAGATCCGGGAGATCAACGGTATAAGTGTAGCAAATCAAACAGTGGAGCAGCTTCAGAAAATGCTTCGGGAGATGAGAGGCAGCATCACCTTTAAGATTGTGCCAAGCTACCGCACGCAGCAGTCGTCCTGTGAGAAAGAATCCCCTTCCACATCCAGACAGTCCCCTGCTAATGGCCATTCCAGCATTAACAGTTCTATCTTGGACTTGCCGTCGACCATTCAGCCAAAAGGACGCCAGATTTATGTACGAGCACAGTTCGAGTATGACCCGGTAAAAGATGACCTCATCCCCTGTAAAGAGGCCGGGATTCGCTTCAGAGTGGGTGACATAATCCAGATTATCAACAAAGATGACCATAACTGGTGGCAGGGCAAGCTGGAGAACACCAAGAATGGCACAGCGGGGCTCATTCCCTCCCCAGAACTCCAGGAGTGGCGGGTGGCCTGTATAGCCATGGAGAAAACaaagcaagaacagcaggcgagCTGTACTTGGTTTGGCAAGAAAAAAAAGCAGTACAAAGACAAATACCTAGCAAAGCACAACGCAGTGTTTGATCAACTAGATCTTGTCACATATGAGGAGGTAGTGAAGTTGCCGGCGTTCAAGAGGAAAACATTAGTTTTACTAGGTGCTCACGGTGTTGGCCGAAGACACATCAAGAACACACTCATCACCAAACACCCAGACAGATTTGCTTATCCCATTCCACACACAACCAGACCTCCAAAGAAAGATGAAGAGAACGGCAAGAATTATTTCTTTGTTTCACATGACCAAATGATGCAGGACATCTCCAACAACGATTACCTGGAGTACGGCAGCCACGAGGACGCGATGTACGGCACACGGCTGGAGACGATACGCAAAATCCATGAGCAGGGACTCATAGCCATACTGGACGTAGAGCCACAGGCACTGAAGGTTTTACGGACAGCTGAATTTGCTCCCTATGTGGTTTTCATAGCTGCACCAACTATCACTCCTGGCATGAATGAGGATGAGTCGCTACAGAGGCTGCAGAAGGAGTCTGAGATCCTCCAGAAGACATATGCACATTACTTTGACCAAACCATCATCAATAATGAAATTGACGAGACCATCCGCCTCCTGGAGGAAGCCATAGACATGGTTTGCAGCACCGCCCAGTGGGTTCCGGTGTCCTGGGTCTACTAAAACAGCAAGCCCATCAACCTGTAACCTTACGCCCTTCATAACCTCACACTAAACAGTGCGTCTCtgcaagaaaacaaaacaaaacttgaaAAGTTTCCCATGATGCAAACAGAAGCCCACCTCTGACATTCAGCAACATCGATGTACCTGCAGTGAGCCCAGTCTTGGCCCCTCACAGACTACCTAGACGTAGTGTtgt
>TCONS_00074527
AATTCCCCGCTCTTGTTGGACCATGGCCGACGACGACGTGCTCTTTGAAGATGTTTACGAGCTGTGTGAGGTCATTGGCAAgGGACCTTTTAGTGTGGTACGAAGATGCATCAACAGAGAGACGGGCCAACAGTTTGCCGTGAAGATTGTGGATGTGGCCAAATTCACCTCCAGCCCTGGCCTCAGCACAGAAGACCTGAAGAGAGAAGCCAGTATCTGCCACATGCTGAAACATCCTCATATAGTGGAGCTTCTAGAGACCTACAGCTCTGATGGGATGCTCTACATGGTGTTTGAGTTCATGGATGGAGCAGATCTCTGCTTTGAGATTGTGAAGAGAGCAGACGCTGGCTTTGTTTACAGTGAAGCGGTAGCCAGTCACTACATGAGACAGATCCTAGAGGCGCTGCGGTATTGCCATGACAACAACATCATTCACCGGGATGTGAAGcCTCATTGTGTGCTGCTGGCATCAAAGGAGAACTCTGCTCCAGTGAAACTTGGTGGCTTTGGTGTTGCTATACAGCTGGGAGAGTCCGGATTAGTGGCTGGAGGCAGAGTGGGCACACCACACTTCATGGCCCCTGAAGTGGTGAAAAGAGAACCTTATGGGAAACCTGTGGACGTTTGGGGCTGTGGAGTCATTCTCTTCATTCTGTTGAGTGGCTGCTTGCCCTTCTATGGCACCAAAGAGCGCCTCTTCGAAGCAATCATTAAAGGAAAATACAAGATGAACCCTCGGCAGTGGGGCCACATCTCAGAGAGTGCCAAAGATCTGGTGCGCCGTATGCTGATGCTGGACCCTGCAGAGAGGATCACAGTCTATGAAGCTCTCAACCACCCCTGGCTGAAGGAGAGAGACCGCTATGCCTACAAGATCCACCTTCCTGAGACCGTCGAACAGCTGAGGAAGTTCAATGCCAGGAGGAAACTAAAAGGTGCTGTGCTCGCTGCAGTCTCCAGTCACAAGTTCAACTCTTTCTATGGCGACCCACCTGAAGAACTGCCTGACTTCTCTGAGGACCCTACTTCCTCAGGAGCTGTATCACAAGTGCTGGACAGTTTGGAGGAGATCCATGCGCTCACAGACTGCAGTGAGAAAGATCTAGACTTTCTACACAGCGTCTTCCAGGACCATCACCTTCACACATTGCTTGATcTGTATGACAAGATAAACACCAAGTCGTCACCGCAAATCAGGAATCCTTCGAGTGACGCAGTTCAGAGAGCCAAAGAGGTACTGGAGGAGATTTCATGCTACCCGGAGAATACAGATGCTAAAGAACTGAGACGGATCCTAACTCAGCCTCATTTCATGGCCTTACTTCAAACTCATGATGTTGTGGCACATGAGGTGTACAGTGACGATGCAATGAGGGTCACCCCTCCCCCCACATCGCCATACCTCAACGGAGACTCACCAGAAAGCACGAACGGAGACATGGACATCGAAAACGTCACACGAGTGCGTCTTGTTCAGTTCCAAAAGAACACAGATGAACCAATGGGCAtcacattgaaaatgaatgacctGAACCACTGCATCGTAGCAAGAATAATGCATGGAGGAATGATTCACAGACAAGGAACTTTACACATTGGAGACGAGATCCGGGAGATCAACGGTATAAGTGTAGCAAATCAAACAGTGGAGCAGCTTCAGAAAATGCTTCGGGAGATGAGAGGCAGCATCACCTTTAAGATTGTGCCAAGCTACCGCACGCAGCAGTCGTCCTGTGAGAAAGAATCCCCTTCCACATCCAGACAGTCCCCTGCTAATGGCCATTCCAGCATTAACAGTTCTATCTTGGACTTGCCGTCGACCATTCAGCCAAAAGGACGCCAGATTTATGTACGAGCACAGTTCGAGTATGACCCGGTAAAAGATGACCTCATCCCCTGTAAAGAGGCCGGGATTCGCTTCAGAGTGGGTGACATAATCCAGATTATCAACAAAGATGACCATAACTGGTGGCAGGGCAAGCTGGAGAACACCAAGAATGGCACAGCGGGGCTCATTCCCTCCCCAGAACTCCAGGAGTGGCGGGTGGCCTGTATAGCCATGGAGAAAACaaagcaagaacagcaggcgagCTGTACTTGGTTTGGCAAGAAAAAAAAGCAGTACAAAGACAAATACCTAGCAAAGCACAACGCAGTGTTTGATCAACTAGATCTTGTCACATATGAGGAGGTAGTGAAGTTGCCGGCGTTCAAGAGGAAAACATTAGTTTTACTAGGTGCTCACGGTGTTGGCCGAAGACACATCAAGAACACACTCATCACCAAACACCCAGACAGATTTGCTTATCCCATTCCACACACAACCAGACCTCCAAAGAAAGATGAAGAGAACGGCAAGAATTATTTCTTTGTTTCACATGACCAAATGATGCAGGACATCTCCAACAACGATTACCTGGAGTACGGCAGCCACGAGGACGCGATGTACGGCACACGGCTGGAGACGATACGCAAAATCCATGAGCAGGGACTCATAGCCATACTGGACGTAGAGCCACAGGCACTGAAGGTTTTACGGACAGCTGAATTTGCTCCCTATGTGGTTTTCATAGCTGCACCAACTATCACTCCTGGCATGAATGAGGATGAGTCGCTACAGAGGCTGCAGAAGGAGTCTGAGATCCTCCAGAAGACATATGCACATTACTTTGACCAAACCATCATCAATAATGAAATTGACGAGACCATCCGCCTCCTGGAGGAAGCCATAGACATGGTTTGCAGCACCGCCCAGTGGGTTCCGGTGTCCTGGGTCTACTAAAACAGCAAGCCCATCAACCTGTAACCTTACGCCCTTCATAACCTCACACTAAACAGTGCGTCTCtgcaagaaaacaaaacaaaacttgaaAAGTTTCCCATGATGCAAACAGAAGCCCACCTCTGACATTCAGCAACATCGATGTACCTGCAGTGAGCCCAGTCTTGGCCCCTCACAGA
>TCONS_00074528
TGATGTGACTGACATCTCCACCTGGCTTTGTTCCTTATTATCATCAACCCATAACTATCCCAAACGTAGGCTTCGTAGTTGCATTCTCCATCTCACCAACCCCTGGTCACAGTGCCGTACTAATGCCGCCACAGTGCTGTGATGTTGCATGATGTTTGTAATACTCTCATGCCCTAGATCTCCAGACCTCCAATCAAGGATAAATTTTCCATCAAGATTTATGTACGAGCACAGTTCGAGTATGACCCGGTAAAAGATGACCTCATCCCCTGTAAAGAGGCCGGGATTCGCTTCAGAGTGGGTGACATAATCCAGATTATCAACAAAGATGACCATAACTGGTGGCAGGGCAAGCTGGAGAACACCAAGAATGGCACAGCGGGGCTCATTCCCTCCCCAGAACTCCAGGAGTGGCGGGTGGCCTGTATAGCCATGGAGAAAACaaagcaagaacagcaggcgagCTGTACTTGGTTTGGCAAGAAAAAAAAGCAGTACAAAGAC
>TCONS_00074529
AGCTCAAACTTGTGTTGCAACGTATAAGATTAAGAAGCCTGCAACTTTATTTACCTCAAGGAATTTGCTTAGCATGGAGATGAGATCCTGAGGAAAACCTGATGACTCTGTCTATCTGTAGGTACTGGAGGAGATTTCATGCTACCCGGAGAATACAGATGCTAAAGAACTGAGACGGATCCTAACTCAGCCTCATTTCATGGCCTTACTTCAAACTCATGATGTTGTGGCACATGAGGTGTACAGTGACGATGCAATGAGGGTCACCCCTCCCCCCACATCGCCATACCTCAACGGAGACTCACCAGAAAGCACGAACGGAGACATGGACATCGAAAACGTCACACGAGTGCGTCTTGTTCAGTTCCAAAAGAACACAGATGAACCAATGGGCAtcacattgaaaatgaatgacctGAACCACTGCATCGTAGCAAGAATAATGCATGGAGGAATGATTCACAGACAAGGAACTTTACACATTGGAGACGAGATCCGGGAGATCAACGGTATAAGTGTAGCAAATCAAACAGTGGAGCAGCTTCAGAAAATGCTTCGGGAGATGAGAGGCAGCATCACCTTTAAGATTGTGCCAAGCTACCGCACGCAGCAGTCGTCCTGTGAGAAAGAATCCCCTTCCACATCCAGACAGTCCCCTGCTAATGGCCATTCCAGCATTAACAGTTCTATCTTGGACTTGCCGTCGACCATTCAGCCAAAAGGACGCCAGATTTATGTACGAGCACAGTTCGAGTATGACCCGGTAAAAGATGACCTCA
>TCONS_00074530
CATGGATGGAGCAGATCTCTGCTTTGAGATTGTGAAGAGAGCAGACGCTGGCTTTGTTTACAGTGAAGCGGTAGCCAGTCACTACATGAGACAGATCCTAGAGGCGCTGCGGTATTGCCATGACAACAACATCATTCACCGGGATGTGAAGTGAGAACTAGCAAATTACACATTACCATCATCACACTAAGAATAAACTGCTTCAAAAACAGCTGCTCTTTTCTCATAAGTAGCCTGCAGCCGCCAGTGTTTAGTGGTCAGTTGCTAAGTGATGAGCGCATAACCAGTTGATGTAATTTTAATCAAAGCTCCCACCAATAAACCACAATTAGGCCAGTTTCAGTGTGGATTGAGTCTGTATTTT

Function

symbol description
caska Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in nervous system; notochord; optic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in FG syndrome and syndromic X-linked intellectual disability Najm type. Orthologous to human CASK (calcium/calmodulin dependent serine protein kinase).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020802-4 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in nervous system; notochord; optic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in FG syndrome and syndromic X-linked intellectual disability Najm type. Orthologous to human CASK (calcium/calmodulin dependent serine protein kinase).

Ensembl:

ensembl_id ENSDARG00000059809

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074526 False 2903 mRNA 0.49 25 33366683 33477588
TCONS_00074527 False 2964 mRNA 0.49 26 33366703 33608427
TCONS_00074528 False 504 processed_transcript 0.48 3 33381249 33382466
TCONS_00074529 False 779 lncRNA 0.47 8 33381720 33394953
TCONS_00074530 True 364 processed_transcript 0.44 3 33438962 33439565

Neighbor

gene id symbol gene type direction distance location
XLOC_037977 NA coding downstream 7639 33356651 ~ 33359044 (-)
XLOC_037976 rpl8 coding downstream 36896 33323104 ~ 33329787 (-)
XLOC_037975 BX545856.1 coding downstream 115677 33247202 ~ 33251006 (-)
XLOC_037974 NA coding downstream 163779 33201515 ~ 33202904 (-)
XLOC_037973 NA coding downstream 187667 33177648 ~ 33179016 (-)
XLOC_037979 mao coding upstream 52537 33660964 ~ 33725972 (-)
XLOC_037980 ndp coding upstream 126423 33734850 ~ 33749556 (-)
XLOC_037981 efhc2 coding upstream 150293 33758720 ~ 33781851 (-)
XLOC_037982 fundc1 coding upstream 175122 33783549 ~ 33785200 (-)
XLOC_037983 dipk2b coding upstream 255096 33863523 ~ 33877514 (-)
XLOC_037970 NA non-coding downstream 244569 33110204 ~ 33122114 (-)
XLOC_037984 dre-mir-221 non-coding upstream 312505 33920932 ~ 33921024 (-)
XLOC_037985 dre-mir-222a non-coding upstream 313037 33921464 ~ 33955939 (-)
XLOC_037986 NA non-coding upstream 333766 33942193 ~ 33943136 (-)
XLOC_037987 NA non-coding upstream 456082 34064509 ~ 34065606 (-)
XLOC_037988 NA non-coding upstream 461309 34069736 ~ 34083226 (-)

Expression


Co-expression Network