XLOC_037981 (efhc2)


Basic Information

Item Value
gene id XLOC_037981
gene name efhc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33758720 ~ 33781851 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074534
AAACAAGTTGTTACCGTTACCGTGGCGAGCAGTTGTGCCGTCTGCGGCTGTCGTCCAACTGAGGGAAAAATAACGTTAATTCGCTGATAATCATGGCGTTACCAATGCTGCCTGGAAATTCAGTCAACAGAAACCTTGGAAAAGACAAATTTCACAAGTCTCAGCATTTTGATTATTCAAATGGAGTAGCTATGATGGTTGGGACAGAGAAGCCGGGCATTGGAGGAGATCTGCTCCTGGGACAGAGTGCAAGAGCCAAATATTCACGGTTTCCAAAAGGAGAGGGCAGTGGTGCTCCAGCATGGCTTGCCTTTGACAAACAGGTCCTGTGTTTTGATGCTTATTTCAATGAAGATGTTCCTCAAAGGAGGGAAGAAAAATATAGAGTACGAAAGTGCAAGATTTACTTCTACCTGGAGGATGACACCATACAAGTGGTGGAGCCAGAGTTCAAAAACAGTGGCATCCCACAAGGAACCCTGATTCGGCGCCACCGCATTCCTCTACCAGCTCCTAAAGATGATTGTTTCTACAATGTGCACCATTTCAACATCAACCAGGAAGTCGTGTTTTATTCCAGAAACTTTATGATCACAGACTGTGACCCTTTCACTCGCAACTTTTTGATAAAAATGGGAGTCCGACTGAATCCTCCTGCTTCCACACCAGCGGATCCCTATACTACCCTTCGACAAGAGTTGGAAGAGAACATGAAGCCACTGCGGCCGTATGAAAGACTGGATACCCTGAAGCAGTTTTTAGAGCATGACCGCCAAGTCCTGCGCTTCTACTGCTACTGGGATGATAGTGAGAGCATGTTTGGAGACCCTAGAGAGCTGATCCTGCATTACTTCCTGGCAGACGACACCATGGAAATGTACGAAGTTGTTCCTCCAAACTCTGGTCGAGACACTGTCCCTAAATTTCTGCACAGGGGCAAGCTTCCCAAGCATGCTCCTATTCCCAAACGTCAGCCTGGAGAAATTACAGACCGCACAGTCCTCAATGTATTTGGACCAGTCGGACAAGGAGGACGCTACATTTTGGACAGCCTCAAAACTGGAGCATTGGAAGAAGAGTTCTATAAAGACTCTGATCTGACTATTGGAGCTGTCATTAATGTATGGGGTCGAAGGGTGTTAATATGTGACTGCGACTACTTCACTAAAGAGTATTATCGCTCTAAATATGGGATTGAGGACTTCCCATCTATCTCATACAAGGCCTCACCTCCACCTAAACCAGCTAAGCAGGTGCCACCCTACACTGGATTTGGATCTGAGGAGGATTCACTGTGTTCTTGCCAGGGTTTGCTGCCTAAACCCCCACAGAAGGATTTCAAGAAGCTTATGGAGAAAGACAGGCAAGGTCTGGTGAGCAACGTGCTGAGATTTGTGGGGAAAATGCTGACAGACAGTCCTGTCGACAAGGAACGTGTTTTTATCATATGCTTCTACCTTACTGATGACACAATAGCTGTCTTTGAACCTCCACAGAGAAACTCAGGTGTGATCGGGGGTAAGTTCTTAGAGAGGGGGCGAGTGAAGAAGCCAGGACAGGAGCTGTTTAAAAGTGAGATGTCGGAGTATTTCACTGCTCAGGATTTGTATGTTGGAGCTCATCTGCTTCTGAACAGTCAACCTTTCCAGCTGGTGGATGCTGACGATTTTACATTCAGCTATATGGAGCAGCATGCAGATGAGTTCCCCAAGGCCAACATTGGCACCATCATTAGCAAGGTAAAATCCATCAGTGAGGAACAGCAGAAGAAAGTAAAACAGTTTTTCACCATGAGTGACCCAAGCAGCACTGGCTCTCTTCCATATGAGTCATTCAGGACTCTGTTGGCAGATTTGGACGTGGAGTTGTCCGAACATGAGATCATGACACTGGGTCGTGTTTATTCGGTGCGGCAGCAGCCAGAGGTGAACGTGGGTCTCATGCTTGCTGTGGCTCAGGATCATCTGAAGAAGAAAAACTTTGAGAAGTTCTCAGAAATGATCCAAGCTTTCACACATGAGGACCGGGACAGATGTGGCCAGCTCTCGTCTAAAGAGGCCCGGATCATCTGTAAGGCTTTTCGACTGCCCCTGTCTGATGACCTGCTAAGAGCCCTTCTGGAGAAGTTTGCAGGCGAGTCAGAGAAGATTGACTATCACGCTTTTCTATCCGGAATCAACTGGAGAGAAAACCCCGTCCCCGCTGTGCTTCCAGAGGACACTGTAAAGTTTGACGCAGACTGGAGAGGAGAAGCTCCAGAGCCTGCAGTGAAAACCATCAACTACTCGCTCTTACTGGAGGACGTCTTTGGCAGCGCCACAAACATTAATGACAGCTAAGAACGGCCTGATGGGATCCTCAAAAGCATGAGAGAGGAAGTCAAGAAGTCTGCAGCACTTTGTGCACCGCATTGATTAAACTCACATTGTCGTT
>TCONS_00074535
ATTTGCAAACAAGTTGTTACCGTTACCGTGGCGAGCAGTTGTGCCGTCTGCGGCTGTCGTCCAACTGAGGGAAAAATAACGTTAATTCGCTGATAATCATGGCGTTACCAATGCTGCCTGGAAATTCAGTCAACAGAAACCTTGGAAAAGACAAATTTCACAAGTCTCAGCATTTTGATTATTCAAATGGAGTAGCTATGATGGTTGGGACAGAGAAGCCGGGCATTGGAGGAGATCTGCTCCTGGGACAGAGTGCAAGAGCCAAATATTCACGGTTTCCAAAAGGAGAGGGCAGTGGTGCTCCAGCATGGCTTGCCTTTGACAAACAGGTCCTGTGTTTTGATGCTTATTTCAATGAAGATGTTCCTCAAAGGAGGGAAGAAAAATATAGAGTACGAAAGTGCAAGATTTACTTCTACCTGGAGGATGACACCATACAAGTGGTGGAGCCAGAGTTCAAAAACAGTGGCATCCCACAAGGAACCCTGATTCGGCGCCACCGCATTCCTCTACCAGCTCCTAAAGATGATTGTTTCTACAATGTGCACCATTTCAACATCAACCAGGAAGTCGTGTTTTATTCCAGAAACTTTATGATCACAGACTGTGACCCTTTCACTCGCAACTTTTTGATAAAAATGGGAGTCCGACTGAATCCTCCTGCTTCCACACCAGCGGATCCCTATACTACCCTTCGACAAGAGGCAAAGAACATGAAGCCACTGCGGCCGTATGAAAGACTGGATACCCTGAAGCAGTTTTTAGAGCATGACCGCCAAGTCCTGCGCTTCTACTGCTACTGGGATGATAGTGAGAGCATGTTTGGAGACCCTAGAGAGCTGATCCTGCATTACTTCCTGGCAGACGACACCATGGAAATGTACGAAGTTGTTCCTCCAAACTCTGGTCGAGACACTGTCCCTAAATTTCTGCACAGGGGCAAGCTTCCCAAGCATGCTCCTATTCCCAAACGTCAGCCTGGAGAAATTACAGACCGCACAGTCCTCAATGTATTTGGACCAGTCGGACAAGGAGGACGCTACATTTTGGACAGCCTCAAATTTATTAGTCAATTGTTATGTAACTTTTTTCACTCACTGTTTACAGACTGGAGCATTGGAAGAAGAGTTCTATAAAGACTCTGATCTGACTATTGGAGCTGTCATTAATGTATGGGGTCGAAGGGTGTTAATATGTGACTGCGACTACTTCACTAAAGAGTATTATCGCTCTAAATATGGGATTGAGGACTTCCCATCTATCTCATACAAGGCCTCACCTCCACCTAAACCAGCTAAGCAGGTGCCACCCTACACTGGATTTGGATCTGAGGAGGATTCACTGTGTTCTTGCCAGGGTTTGCTGCCTAAACCCCCACAGAAGGATTTCAAGAAGCTTATGGAGAAAGACAGGCAAGGTCTGGTGAGCAACGTGCTGAGATTTGTGGGGAAAATGCTGACAGACAGTCCTGTCGACAAGGAACGTGTTTTTATCATATGCTTCTACCTTACTGATGACACAATAGCTGTCTTTGAACCTCCACAGAGAAACTCAGGTGTGATCGGGGGTAAGTTCTTAGAGAGGGGGCGAGTGAAGAAGCCAGGACAGGAGCTGTTTAAAAGTGAGATGTCGGAGTATTTCACTGCTCAGGATTTGTATGTTGGAGCTCATCTGCTTCTGAACAGTCAACCTTTCCAGCTGGTGGATGCTGACGATTTTACATTCAGCTATATGGAGCAGCATGCAGATGAGTTCCCCAAGGCCAACATTGGCACCATCATTAGCAAGGTAAAATCCATCAGTGAGGAACAGCAGAAGAAAGTAAAACAGTTTTTCACCATGAGTGACCCAAGCAGCACTGGCTCTCTTCCATATGAGTCATTCAGGACTCTGTTGGCAGATTTGGACGTGGAGTTGTCCGAACATGAGATCATGACACTGGGTCGTGTTTATTCGGTGCGGCAGCAGCCAGAGGTGAACGTGGGTCTCATGCTTGCTGTGGCTCAGGATCATCTGAAGAAGAAAAACTTTGAGAAGTTCTCAGAAATGATCCAAGCTTTCACACATGAGGACCGGGACAGATGTGGCCAGCTCTCGTCTAAAGAGGCCCGGATCATCTGTAAGGCTTTTCGACTGCCCCTGTCTGATGACCTGCTAAGAGCCCTTCTGGAGAAGTTTGCAGGCGAGTCAGAGAAGATTGACTATCACGCTTTTCTATCCGGAATCAACTGGAGAGAAAACCCCGTCCCCGCTGTGCTTCCAGAGGACACTGTAAAGTTTGACGCAGACTGGAGAGGAGAAGCTCCAGAGCCTGCAGTGAAAACCATCAACTACTCGCTCTTACTGGAGGACGTCTTTGGCAGCGCCACAAACATTAATGACAGCTAAGAACGGCCTGATGGGATCCTCAAAAGCATGAGAGAGGAAGTCAAGAAGTCTGCAGCACTTTGTGCACCGCATTGATTAAACTCACATTGTCGTT

Function

symbol description
efhc2 Predicted to enable alpha-tubulin binding activity. Acts upstream of or within multi-ciliated epithelial cell differentiation and specification of pronephric distal tubule identity. Predicted to be active in axoneme and mitotic spindle. Predicted to colocalize with microtubule. Is expressed in several structures, including forerunner cell group; intermediate mesoderm; notochord; sensory system; and tail bud. Orthologous to human EFHC2 (EF-hand domain containing 2).

GO:

id name namespace
GO:0010975 regulation of neuron projection development biological_process
GO:0007052 mitotic spindle organization biological_process
GO:1903251 multi-ciliated epithelial cell differentiation biological_process
GO:0039010 specification of pronephric distal tubule identity biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0072686 mitotic spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0005930 axoneme cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0043014 alpha-tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031001-10 Predicted to enable alpha-tubulin binding activity. Acts upstream of or within multi-ciliated epithelial cell differentiation and specification of pronephric distal tubule identity. Predicted to be active in axoneme and mitotic spindle. Predicted to colocalize with microtubule. Is expressed in several structures, including forerunner cell group; intermediate mesoderm; notochord; sensory system; and tail bud. Orthologous to human EFHC2 (EF-hand domain containing 2).

Ensembl:

ensembl_id ENSDARG00000004204

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074534 False 2433 mRNA 0.47 15 33758720 33781845
TCONS_00074535 True 2482 lncRNA 0.47 15 33758720 33781851

Neighbor

gene id symbol gene type direction distance location
XLOC_037980 ndp coding downstream 9164 33734850 ~ 33749556 (-)
XLOC_037979 mao coding downstream 32748 33660964 ~ 33725972 (-)
XLOC_037978 caska coding downstream 150293 33366683 ~ 33608427 (-)
XLOC_037977 NA coding downstream 399676 33356651 ~ 33359044 (-)
XLOC_037976 rpl8 coding downstream 428933 33323104 ~ 33329787 (-)
XLOC_037982 fundc1 coding upstream 1698 33783549 ~ 33785200 (-)
XLOC_037983 dipk2b coding upstream 81672 33863523 ~ 33877514 (-)
XLOC_037984 dre-mir-221 coding upstream 139081 33920932 ~ 33921024 (-)
XLOC_037985 dre-mir-222a coding upstream 139613 33921464 ~ 33955939 (-)
XLOC_037986 NA coding upstream 160342 33942193 ~ 33943136 (-)
XLOC_037975 BX545856.1 non-coding downstream 507714 33247202 ~ 33251006 (-)
XLOC_037974 NA non-coding downstream 555816 33201515 ~ 33202904 (-)
XLOC_037973 NA non-coding downstream 579704 33177648 ~ 33179016 (-)
XLOC_037970 NA non-coding downstream 636606 33110204 ~ 33122114 (-)
XLOC_037987 NA non-coding upstream 282658 34064509 ~ 34065606 (-)
XLOC_037988 NA non-coding upstream 287885 34069736 ~ 34083226 (-)

Expression


Co-expression Network