LOC118944104


Basic Information

Item Value
gene id LOC118944104
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 38711025 ~ 38736584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039418.1
AGATACCCGACAGGCTTTAAGACACAGAGATGGTGCTCTGATAAGGTAGCACAGCTGAGAAACggcaaaaggagagagagagaagatgtaggaggcagagagagagagagacagagacagagagctgtttcttctgctgtactgtagtttGAAAGTCACAGAAATAGCTGAGTCTTGCAGGAGACAACTTGAAGGGCTTTGGTGGTATAAATACCCTGCTTTAAATGGATTAAAGAAACCGCTCGGTCGCCTGTCACCGCCACacacaggggagggagagagagagctggaggagacaggaggaggaacaTACTGGAACTTACAGAAGGAAGAGGAAGGAGTTGAGGTATCTAGTCTGTATATCGGACAGTGgttggtacgtgtgtgtgtggaagaaAACATCAACTCGTCTACTGTTCTCTATGACCGGCTGCTCTGAACTCACCTGGacagacagatgagaagGAGAGAACACAGGGAAGGACAGTAGTGAATCAGATAGAGCTGCAGCTGCACCTCGTCGGCAGAGGACTACAGACTACCCACCAAAACGACCGGCTGGCTGACCGACCGACCGACTACTCCCCTTCGGTGGCTTTATTGAATGGGACCCTGGGCACAGAGCGGGGCTGGAGAATTTAAAATACGTGTCCCTCAGGAGTACTCCTGTCCTACACGCGTAGCTGTGCCCCGAGCAGCGAGCTGCGAAACACACAGCCAATAAATCAATAGCAGGGACCTCAGATTCCTCCATTACCACCTTCCCCCCCCGGCTGGCCTGGCGGAGGACAGCAGCAGAGCTACAGATGAGAACCTGCTGACCAGGGCCTAACCACCACAGCCCCTGGAGGACAGCCCCTGGAGGACAGCCGTGGAGGACAGCCCTGGAGGACAGCCGTGGAGGACAGCCCTGGTTCTGGACCCTCTCTAACCATCAACACAAGACAAGGGTGTTCTGACTGCAGTGGTGAGGAGGGCGGAGGCCTGGTTGTGGTCCCTCTGGTTCCATTTGGAGCTACAATACACCCGAAGGCAGCTAAACACAGAGAAGCCCACAATGACATCCTGAAAATACTTATTTTATAgttattttctctctcctcttattTCTAGACCTTCAAGTCCTTGTGTTTTTATTCAAGCAGGTTTTTACACAGGGAGAAAATAACACGAGTATAAGCATTGTCCGTGATGATGCTTTTTGAGGATTACGTCTTGATGTTTGACAGTTACAGGGAAATTGAATTCAGGCTTTAAAACCCCGTCCCAATATTTCCCATGTCCTCTGTCGCTACAGTAATCAAGGTTGTCCACGTTCAGAGTGTTATTTGAGACTGAGCAACAATAGCATGTTCATGACCGTATACACACTCCATCTCatgtgagaggagagacaagggccCCAGCTTTAATCCACCGGCCCCTGGAACAAATCATCTGACGTGTGAAAAgaaaaagacacaacacaacagaacagaacagaacccaacagaacacaacagaacccaACCCAACAGAAcccaaca
>TU2206405
gagagagagagacagagaggcagagagctgtttcttctgctgtactgtagtttGAAAGTCACAGAAATAGCTGAGTCTTGCAGGAGACAACTTGAAGGGCTTTGGTGGTATAAATACCCTGCTTTAAATGGATTAAAGAAACCGCTCGGTCGCCTGTCACCGCCACacacaggggagggagagagagagctggaggagacaggaggaggaacaTACTGGAACTTACAGAAGGAAGAGGAAGGAGTTGAGGTATCTAGTCTGTATATCGGACAGTGgttggtacgtgtgtgtgtggaagaaAACATCAACTCGTCTACTGTTCTCTATGACCGGCTGCTCTGAACTCACCTGGacagacagatgagaagGAGAGAACACAGGGAAGGACAGTAGTGAATCAGATAGCTGCAGCTGCACCTCGTCGGCAGAGGACTACAGACTACCCACCAAAACGACCGGCTGGCTGACCGACCGACCGACTACTCCCCTTCGGTGGCTTTATTGAATGGGACCCTGGGCACAGAGCGGGGCTGGAGAATTTAAAATACGTGTCCCTCAGGAGTACTCCTGTCCTACACGCGTAGCTGTGCCCCGAGCAGCGAGCTGCGAAACACACAGCCAATAAATCAATAGCAGGGACCTCAGATTCCTCCATTACCACCTTCCCCCCCCGGCTGGCCTGGCGGAGGACAGCAGCAGAGCTACAGATGAGAACCTGCTGACCAGGGCCTAACCACCACAGCCCCTGGAGGACAGCCCCTGGAGGACAGCCGTGGAGGACAGCCCTGGAGGACAGCCGTGGAGGACAGCCCTGGTTCTGGACCCTCTCTAACCATCAACACAAGACAAGGGTGTTCTGACTGCAGTGGTGAGGAGGGCGGAGGCCTGGTTGTGGTCCCTCTGGTTCCATTTGGAGCTACAATACACCCGAAGGCAGCTAAACACAGAGAAGCCCACAATGACATCCTGAAAATACTTATTTTATAgttattttctctctcctcttattTCTAGACCTTCAAGTCCTTGTGTTTTTATTCAAGCAGGTTTTTACACAGGGAGAAAATAACACGAGTATAAGCATTGTCCGTGATGATGCTTTTTGAGGATTACGTCTTGATGTTTGACAGTTACAGGGAAATTGAATTCAGGCTTTAAAACCCCGTCCCAATATTTCCCATGTCCTCTGTCGCTACAGTAATCAAGGTTGTCCACGTTCAGAGTGTTATTTGAGACTGAGCAACAATAGCATGTTCATGACCGTATACACACTCCATCTCatgtgagaggagagacaagggccCCAGCTTTAATCCACCGGCCCCTGGAACAAATCATCTGACGTGTGAAAAgaaaaagacacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039418.1 False 1526 mRNA 0.50 3 38720782 38736584
TU2206405 True 1365 lncRNA 0.50 4 38711025 38736522

Neighbor

gene id symbol gene type direction distance location
ppp1r13l ppp1r13l coding upstream 67771 38590146 ~ 38653011 (+)
LOC110503272 NA coding upstream 193015 38526884 ~ 38527767 (+)
rasgrp4 rasgrp4 coding upstream 197616 38463435 ~ 38523166 (+)
LOC110511668 LOC106591056 coding upstream 599004 38039863 ~ 38121778 (+)
LOC118944107 NA coding upstream 741652 37976645 ~ 37979130 (+)
tmem91 tmem91 coding downstream 885 38737469 ~ 38757769 (+)
bckdha bckdha coding downstream 34256 38770840 ~ 38793470 (+)
bicra LOC106613370 coding downstream 108898 38845482 ~ 38932575 (+)
ehd2b LOC106613377 coding downstream 206840 38943424 ~ 38977744 (+)
psmd8 psmd8 coding downstream 247023 38983607 ~ 38990269 (+)
G1929286 NA non-coding upstream 28141 38681804 ~ 38692641 (+)
G1929284 NA non-coding upstream 31758 38682223 ~ 38689024 (+)
G1929269 NA non-coding upstream 75111 38643981 ~ 38645671 (+)
G1929265 NA non-coding upstream 91862 38628488 ~ 38628920 (+)
G1929264 NA non-coding upstream 95205 38625322 ~ 38625577 (+)
G1929291 NA non-coding downstream 25807 38762391 ~ 38763052 (+)
G1929223 NA non-coding downstream 26619 38763203 ~ 38765223 (+)
G1929320 NA non-coding downstream 76107 38812691 ~ 38813024 (+)
G1929321 NA non-coding downstream 76855 38813439 ~ 38814016 (+)
G1929228 NA non-coding downstream 79806 38816390 ~ 38817249 (+)
G1929196 NA other upstream 207677 38509846 ~ 38513105 (+)
G1929037 NA other upstream 522258 38197898 ~ 38198524 (+)
G1928851 NA other upstream 1086623 37633215 ~ 37634159 (+)
spred3 spred3 other downstream 284249 39020800 ~ 39049676 (+)
G1929664 NA other downstream 811228 39547812 ~ 39549780 (+)
G1929808 NA other downstream 1137694 39874278 ~ 39877275 (+)
G1929816 NA other downstream 1151743 39888327 ~ 39889155 (+)

Expression


Co-expression Network