LOC110503192 (LOC106613220)


Basic Information

Item Value
gene id LOC110503192
gene name LOC106613220
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39207177 ~ 39235039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581558.2
tagctacccgtttcacatccgttacatgtgCACGAAGCCGAGTGGGCGGTTGTCAATCTGGTATTGCTTATCTGTGTGTCTCCAACGCTTTCCTCTATTCGTCACACTGCACCATCCAACGACGACGTCGAGTGACCATAGGGGGGCACACAGCGACGCAGGGGAACTGAAATGTAAACGCGCAACAATTGATCATAACCATCCGACTTGTCAGCCTCTCATCTCCAGTGGAGTCGCGGTGAGACAGCGGACACATATGTCTCACTTATATAGCTGCTGTGGACCATATTGAGCTGAAATTGATTCACGCCAGAGGGTCAATAATGTTATAAGATAAACACCGGAAAGCTTCCACTCACGTGTTTGTATAGTTTCTATGAAAACTGtagatttttgtatttttataccCGTGTTTTTGTGCGTTCTTCGTGTTTGTTCAGCAACTCTCCTTTCTAAACACACATCATCACAATACGCGGATTGCGTGCTCAGTGTGTGTGATAAAGAAATTACATTATAGGAATAATTCACTCAGAGGATAAGAGGTGTAACGTTACGTCGTTTAGCTCAGTCACTCCTCACCGGCGCCCGTTCGTCCCAGTCTGCTTCGGGTCTCTCCGCCATCGGGAGTTTCCCTACCTCGGTTTGGTCGGATCGTTGTTCTTCCCAGTGAACTGCAGAAGAGCGAGCTCGCGCTACCCGGTAAAAGATTATGTCGGTGTTGATCCCGGATGACCGGGCATTCAGCAGCTTCAAGGAGGAGTGCGGGAGTGAGGAGGGCTGGAGTCTGACCTACAATAAGACGGACATGACAGTGTGGACTCAGACTAtaggaggagacgaggagaagTCACTCCACAAGATTAAGTGTCGGATGGCGTGTAAGGACGTGCCAGCTGAGACCATGTACGATGTTCTCCATGACATCGAGTACCGGAGGAAATGGGACGCGAACGTCATCGAAACCTTCGACATCGGAAAACTCACTGTTAACGCAGACGTGGGCTACTACTCCTGGAAGTGTCCCAAGCCGCTGAGGAACCGTGACGTCATCACGCTGCGCTCTTGGCTGCCCACTGGCAGTGATTACATCATCATGAACTACTCTGTCAAACATGCTAAATACCCGCCAAAGAAGGACATGGTACGAGCTGTGTCCATCCAGACTGGCTACCTGATCCAGAGCCACGGACCGAACCACTGCACTCTTACCTACCTGGCACACGTGGACCCAAAAGGTTCACTACCCAAGTGGGTTGTAAACAAGTCTTCCCACTTTCTGGCTCCCAAAgCGATGAAGAAGATCAGTAAGGCGTGTCTGAAGTACGGAGAGTGGAAGCAGAGACACAACCCGGGATTCAAGCCATGGCTCTACCCTGAGCagactacactacccacaatCCCATTGTCCGAGCTTAGCATCCAGCACGCTGACAGCCTGGAGAACATTGACGAGAGTACACTCAGcgagatgcagacacgggaggagagagatagcgactaacaccaaacacacacctcagtgagatcagagaggagagagacagtgactaacaccacacacacacctcagtgagatcagagaggagagagacagtgactaacaccacacacacacctcagtgagatcagagaggagagagatagtgactaacaccaaacacacacctcagtgagatcagagaggagagag
>XM_036961823.1
ATAGAGAAGGAAACATATGTGTCGGATGGCGTGTAAGGACGTGCCAGCTGAGACCATGTACGATGTTCTCCATGACATCGAGTACCGGAGGAAATGGGACGCGAACGTCATCGAAACCTTCGACATCGGAAAACTCACTGTTAACGCAGACGTGGGCTACTACTCCTGGAAGTGTCCCAAGCCGCTGAGGAACCGTGACGTCATCACGCTGCGCTCTTGGCTGCCCACTGGCAGTGATTACATCATCATGAACTACTCTGTCAAACATGCTAAATACCCGCCAAAGAAGGACATGGTACGAGCTGTGTCCATCCAGACTGGCTACCTGATCCAGAGCCACGGACCGAACCACTGCACTCTTACCTACCTGGCACACGTGGACCCAAAAGGTTCACTACCCAAGTGGGTTGTAAACAAGTCTTCCCACTTTCTGGCTCCCAAAgCGATGAAGAAGATCAGTAAGGCGTGTCTGAAGTACGGAGAGTGGAAGCAGAGACACAACCCGGGATTCAAGCCATGGCTCTACCCTGAGCagactacactacccacaatCCCATTGTCCGAGCTTAGCATCCAGCACGCTGACAGCCTGGAGAACATTGACGAGAGTACACTCAGcgagatgcagacacgggaggagagagatagcgactaacaccaaacacacacctcagtgagatcagagaggagagagacagtgactaacaccacacacacacctcagtgagatcagagaggagagagacagtgactaacaccacacacacacctcagtgagatcagagaggagagagatagtgactaacaccaaacacacacctcagtgagatcagagaggagagag

Function

NR:

description
START domain-containing protein 10 isoform X1

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581558.2 False 1693 mRNA 0.50 6 39207177 39235039
XM_036961823.1 True 844 mRNA 0.52 6 39208612 39235039

Neighbor

gene id symbol gene type direction distance location
LOC110503486 LOC106613381 coding upstream 110465 39091519 ~ 39096712 (+)
LOC118944042 LOC106590898 coding upstream 115944 39087111 ~ 39091233 (+)
spred3 spred3 coding upstream 157501 39020800 ~ 39049676 (+)
psmd8 psmd8 coding upstream 216908 38983607 ~ 38990269 (+)
ehd2b LOC106613377 coding upstream 229433 38943424 ~ 38977744 (+)
LOC110516717 LOC106581405 coding downstream 3141 39238180 ~ 39350381 (+)
LOC110503405 NA coding downstream 160984 39396023 ~ 39629211 (+)
LOC110503201 NA coding downstream 395624 39630663 ~ 39632379 (+)
trnat-agu-148 NA coding downstream 529620 39764659 ~ 39764732 (+)
LOC110503199 LOC106613203 coding downstream 565698 39800737 ~ 39809748 (+)
G1929495 NA non-coding upstream 3047 39203865 ~ 39204130 (+)
G1929493 NA non-coding upstream 4239 39202681 ~ 39202938 (+)
G1929468 NA non-coding upstream 59302 39147625 ~ 39147875 (+)
G1929467 NA non-coding upstream 63918 39142629 ~ 39143259 (+)
G1929462 NA non-coding upstream 99214 39106767 ~ 39107963 (+)
G1929526 NA non-coding downstream 52659 39287698 ~ 39291335 (+)
G1929530 NA non-coding downstream 76473 39311512 ~ 39311974 (+)
G1929560 NA non-coding downstream 143010 39378049 ~ 39399639 (+)
G1929562 NA non-coding downstream 149919 39384958 ~ 39388137 (+)
G1929564 NA non-coding downstream 154295 39389334 ~ 39390556 (+)
bicra LOC106613370 other upstream 274628 38845482 ~ 38932575 (+)
ppp1r13l ppp1r13l other upstream 571785 38590146 ~ 38653011 (+)
G1929196 NA other upstream 694072 38509846 ~ 38513105 (+)
G1929037 NA other upstream 1008653 38197898 ~ 38198524 (+)
G1929664 NA other downstream 312773 39547812 ~ 39549780 (+)
G1929808 NA other downstream 639239 39874278 ~ 39877275 (+)
G1929816 NA other downstream 653288 39888327 ~ 39889155 (+)
G1929891 NA other downstream 790896 40025935 ~ 40028517 (+)
G1929901 NA other downstream 814325 40049364 ~ 40082173 (+)

Expression


Co-expression Network