XLOC_038044


Basic Information

Item Value
gene id XLOC_038044
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38558639 ~ 38560263 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075428
TGCacattcactcaaaaatgaacgtTCTGGagtcatttatttacctttaggCAGTTCCAATCTTCTAGGAAAAAGGGTTGCTCTTTTCCTTTATAAGCAAACTACATATGTTTCACAGACTTCTAAAAACCCACAAGATGGTTTCAATAGCCTGCTGAAAACCAGACTACACTAGTTTGGTGGTCTTAGCTAGTCTTCCACTGTGAAAGTGGTGAAAACTTTTCTAAAAGCAGGTTGGTGCCTTTTTCTAACCATGTTTGGAGACCAACCATGATCAAGCAAAACAGCCTTGAAAAATACCAGTAGCTGgctcccattgacttccataatattttatttcctATATATTATGCAAAtgaatgggtgccagcaaccagcacttttcaaaatatcttcttttgtgttcaatggaagtGTTGAAAAACCAGCCTAAACTAGTTTGGTGGTCTTGGCTTGTCTTCCAGTCCGCCCAGATGAAAAGTGTTGAAAACTTCTTTAAAACCAGGCTGGGTTTTTGGCTGAAAAGGTTTGGAGACCAACTATGATCAAGTAAAACAGGCTGGTTttagattaatattatttttcagcagggtaaatcaaaacttttaaacctttatgagtttctttcttctgttgaa
>TCONS_00075429
CTCCAATATATTAACAATTTTATTTGTTCAATCATATTTAATGAGGCTACAGGGAGTGTCTTTAAAACATCAGTGCAATCGATGGCTCAGCAGAATGACTTGAGTGTACGAAGCTGACAGGAAAATGAAAGTAGATATGTACAAAGGCTGTGGCTTCGGTCGTACTCTTGTTATAATGAGAAAGCTGACGGCTGCGGAGGTGGAACAAGGAAGACAAACACAAATAAGGCACCACGAGTTTCTCAGCGCAACCAATGCCAAGAGCTTGAAGCAGAGATTACATGAAAGATGAGAGACTTTCAGCCAGCACCGTCACTCCAACTGTTCCCTGCTGGCAGACCGAACGGTGAGGCTGTTAAAAACAACTATTTCAACACCTCTGAATCCGTAcattgaacaaaaaaagaaagaaaaaaaagaaaattaaatcgTCTCACTAAAATGACCGGTTAACTAACatataatctgtttttatttatttatttattttaaggaaCACGTCCTAAATCTGATTGCacattcactcaaaaatgaacgtTCTGGagtcatttatttacctttaggCAGTTCCAATCTTCTAGGAAAAAGGGTTGCTCTTTTCCTTTATAAGCAAACTACATATGTTTCACAGACTTCTAAAAACCCACAAGATGGTTTCAATAGCCTGCTGAAAACCAGACTACACTAGTTTGGTGGTCTTAGCTAGTCTTCCACTGTGAAAGTGGTGAAAACTTTTCTAAAAGCAGGTTGGTGCCTTTTTCTAACCATGTTTGGAGACCAACCATGATCAAGCAAAACAGCCTTGAAAAATACCAGTAGCTGgctcccattgacttccataatattttatttcctATATATTATGCAAAtgaatgggtgccagcaaccagcacttttcaaaatatcttcttttgtgttcaatggaagtGTTGAAAAACCAGCCTAAACTAGTTTGGTGGTCTTGGCTTGTCTTCCAGTCCGCCCAGATGAAAAGTGTTGAAAACTTCTTTAAAACCAGGCTGGGTTTTTGGCTGAAAAGGTTTGGAGACCAACTATGATCAATTAAAATAGGCTGGTTttagattaatattatttttcagcagggtaaatcaaaacttttaaacctttatgagtttctttcttctgttgaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075428 False 638 lncRNA 0.37 2 38558639 38559750
TCONS_00075429 True 1151 lncRNA 0.38 2 38558639 38560263

Neighbor

gene id symbol gene type direction distance location
XLOC_038043 BX001051.1 coding downstream 89073 38469446 ~ 38469566 (-)
XLOC_038042 znf142 coding downstream 159207 38385561 ~ 38399432 (-)
XLOC_038041 ccdc93 coding downstream 190501 38353452 ~ 38368138 (-)
XLOC_038040 NA coding downstream 205754 38351581 ~ 38352885 (-)
XLOC_038039 BX548038.3 coding downstream 354111 38204407 ~ 38204528 (-)
XLOC_038045 si:dkey-101k6.5 coding upstream 4637 38564900 ~ 38587275 (-)
XLOC_038046 NA coding upstream 148200 38708463 ~ 38709221 (-)
XLOC_038047 myl1 coding upstream 433969 38994232 ~ 39005317 (-)
XLOC_038048 FP016012.1 coding upstream 670263 39230526 ~ 39282273 (-)
XLOC_038049 erbb4b coding upstream 753681 39313944 ~ 39624173 (-)
XLOC_038037 NA non-coding downstream 486723 38070084 ~ 38071916 (-)
XLOC_038034 BX511075.1 non-coding downstream 738427 37817266 ~ 37820212 (-)
XLOC_038050 NA non-coding upstream 1350433 39910696 ~ 39939616 (-)
XLOC_038052 NA non-coding upstream 1520627 40080890 ~ 40350169 (-)
XLOC_038053 BX936447.1 non-coding upstream 1824867 40385130 ~ 40385247 (-)

Expression


Co-expression Network