XLOC_038054


Basic Information

Item Value
gene id XLOC_038054
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 40388580 ~ 40484854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075437
CTTTGATCCAAGCacctgccttgaactctagcctgaaTCCCGACCTTGATATTAGCCGCCTGCCTCAGACCCATGCCTGAATATTCATACTGTGCTTACCTGCCGCCAACCCTTCAACGTAACACtgttgtgtttgatGTGGAAGATTGTGCTACACAAACTGTCAATGGAGCGTGAAATCCGGCCAGCCATGCATTATGGATGGGGCAAAGTCCACCTTATTTTTAGATTGTGGCTCTTGTGGAGCTGCAGTACAGTGCATTGTGTGCTATACTGTATTAGTTAGGCCAAATAAAGTGCAAATTGACTGACAGCACTTTTCaccaaaatgtaaatatttaagcaGGCTTACCATTAAAGCATTTATGATCTAAGGAAGGATTCAGGATGCATATTTCATTACAGAAGCTCCCTCTGCtcagagaatgtcaatcaaacaaTTACTTAGATCAGTGATTATCAATTTGATGGATCTTGAGCTCAAAAATGGACTGCCGGACTGTTCTGATAGAGTTGTGGATGGCAAGGAAGGACATAATGTTAAATGATAAAACCCA
>TCONS_00075438
caggaaagccatccatccTGAGGTGGAAGATTGTGCTACACAAACTGTCAATGGAGCGTGAAATCCGGCCAGCCATGCATTATGGATGGGGCAAAGTCCACCTTATTTTTAGATTGTGGCTCTTGTGGAGCTGCAGTACAGTGCATTGTGTGCTATACTGTATTAGTTAGGCCAAATAAAGTGCAAATTGACTGACAGCACTTTTCaccaaaatgtaaatatttaagcaGGCTTACCATTAAAGCATTTATGATCTAAGGAAGGATTCAGGATGCATATTTCATTACAGAAGCTCCCTCTGCtcagagaatgtcaatcaaacaaTTACTTAGATCAGTGATTATCAATTTGATGGATCTTGAGCTCAAAAATGGACTGCCGGACTGTTCTGATAGAGTTGTGGATGGCAAGGAAGGACATAATGTTAAATGATAAAACCCA
>TCONS_00075011
GCATCACCTGTGCGCCACCCATTtgattagtttttgtttgttttgttatccattaaaactttaaaagttcGTCAGTTTCCCGTCTTCTCATTCCATTGAACTATTTATCGACAGAATTGGAGCTTGCCTTCTCTCTCACCAAGCAGATCCTTGCAGACCTAGGATGGTGAAAATTTTCTGATGGCACCCTGAAGGTTGCCAGGCTTCATCACTTGTTCACTGCTTCAAGAACAAGTTGAAACCAGGCCGCGAGGCTCTTCATCACAGTGGTGGAAGATTGTGCTACACAAACTGTCAATGGAGCGTGAAATCCGGCCAGCCATGCATTATGGATGGGGCAAAGTCCACCTTATTTTTAGATTGTGGCTCTTGTGGAGCTGCAGTACAGTGCATTGTGTGCTATACTGTATTAGTTAGGCCAAATAAAGTGCAAATTGACTGACAGCACTTTTCaccaaaatgtaaatatttaagcaGGCTTACCATTAAAGCATTTATGATCTAAGGAAGGATTCAGGATGCATATTTCATTACAGAAGCTCCCTCTGCtcagagaatgtcaatcaaacaaTTACTTAGATCAGTGATTATCAATTTGATGGATCTTGAGCTCAAAAATGGACTGCCGGACTGTTCTGATAGAGTTGTGGATGGCAAGGAAGGACATAATGTTAAATGATAAAACCCA
>TCONS_00074638
AAGGTTGTCTTCAGAATCTTTTAATAGTTCTTAAGTGATTTGCTTATTTCTGCCAGATTTATCGACAGAATTGGAGCTTGCCTTCTCTCTCACCAAGCAGATCCTTGCAGACCTAGGATGGTGAAAATTTTCTGATGGCACCCTGAAGGTTGCCAGGCTTCATCACTTGTTCACTGCTTCAAGAACAAGTTGAAACCAGGCCGCGAGGCTCTTCATCACAGTGGTGGAAGATTGTGCTACACAAACTGTCAATGGAGCGTGAAATCCGGCCAGCCATGCATTATGGATGGGGCAAAGTCCACCTTATTTTTAGATTGTGGCTCTTGTGGAGCTGCAGTACAGTGCATTGTGTGCTATACTGTATTAGTTAGGCCAAATAAAGTGCAAATTGACTGACAGCACTTTTCaccaaaatgtaaatatttaagcaGGC
>TCONS_00075439
CGTTTCCTTAAATTATTCATCAGTTCTACATAGAGTCACATTTTAtattgatggtccgtttgtttaatATTTATCGACAGAATTGGAGCTTGCCTTCTCTCTCACCAAGCAGATCCTTGCAGACCTAGGATGGTGAAAATTTTCTGATGGCACCCTGAAGGTTGCCAGGCTTCATCACTTGTTCACTGCTTCAAGAACAAGTTGAAACCAGGCCGCGAGGCTCTTCATCACAGTGATGCTGCTTAGGCTTAACAGATAAGATGGCTTCCTCTCTGAGAACTCGTGAAGTGGCAGGACACTGCAGAATTGAGGATGGACAAAAATGTCAGcttttgttcataaaacagtTTCTTTGTCTTTGTTCCTTCCGTTTTCTCTTCCCATAGATTGCTTTCCagtgtttttaaacattattctttttttttaaatgacatttgaaTGTTTATAGATGCTGCTTTCATCTTCCATATGCATTTCTTTTTAGTttctaagtgtgtgtttgtgtctgttttaGTAAATAATGCTTTTTCCAAAGAGCGTCTGATGTTAAAGTGCTTCTATTATGCTTCTAATTTTGTTTTGGACTATTAATTTTAtgagtcatgtttttttttgttacattgtttcattattcattaataataatgtaaaatgtctGATTCTGCAACATGTTACAGAGTTCATACGCA
>TCONS_00075440
CCTGTGCGCCACCCATTtgattagtttttgtttgttttgttatccattaaaactttaaaagttcGTCAGTTTCCCGTCTTCTCATTCCATTGAACTATTTATCGACAGAATTGGAGCTTGCCTTCTCTCTCACCAAGCAGATCCTTGCAGACCTAGGATGGTGAAAATTTTCTGATGGCACCCTGAAGGTTGCCAGGCTTCATCACTTGTTCACTGCTTCAAGAACAAGTTGAAACCAGGCCGCGAGGCTCTTCATCACAGTGATGCTGCTTAGGCTTAACAGATAAGATGGCTTCCTCTCTGAGAACTCGTGAAGTGGCAGGACACTGCAGAATTGAGGATGGACAAAAATGTCAGcttttgttcataaaacagtTTCTTTGTCTTTGTTCCTTCCGTTTTCTCTTCCCATAGATTGCTTTCCagtgtttttaaacattattctttttttttaaatgacatttgaaTGTTTATAGATGCTGCTTTCATCTTCCATATGCATTTCTTTTTAGTttctaagtgtgtgtttgtgtctgttttaGTAAATAATGCTTTTTCCAAAGAGCGTCTGATGTTAAAGTGCTTCTATTATGCTTCTAATTTTGTTTTGGACTATTAATTTTAtgagtcatgtttttttttgttacattgtttcattattcattaataataatgtaaaatgtctGATTCTGCAACATGTTACAGAGTTCATACGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117316

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075437 False 557 lncRNA 0.42 2 40388580 40390704
TCONS_00075438 False 441 lncRNA 0.40 2 40388580 40393559
TCONS_00075011 False 688 lncRNA 0.41 4 40388580 40484854
TCONS_00074638 False 433 lncRNA 0.43 3 40388789 40484119
TCONS_00075439 False 689 lncRNA 0.36 4 40473541 40484740
TCONS_00075440 True 717 lncRNA 0.36 4 40473541 40484848

Neighbor

gene id symbol gene type direction distance location
XLOC_038053 BX936447.1 coding downstream 3333 40385130 ~ 40385247 (-)
XLOC_038052 NA coding downstream 38411 40080890 ~ 40350169 (-)
XLOC_038051 ikzf2 coding downstream 315325 39960118 ~ 40073255 (-)
XLOC_038050 NA coding downstream 448964 39910696 ~ 39939616 (-)
XLOC_038049 erbb4b coding downstream 764407 39313944 ~ 39624173 (-)
XLOC_038055 CU367848.1 coding upstream 24675 40509529 ~ 40509643 (-)
XLOC_038056 bard1 coding upstream 132361 40617215 ~ 40683768 (-)
XLOC_038057 NA coding upstream 133311 40618165 ~ 40619015 (-)
XLOC_038058 abca12 coding upstream 200759 40685613 ~ 40765868 (-)
XLOC_038059 CR932999.1 coding upstream 282201 40767055 ~ 40777341 (-)
XLOC_038048 FP016012.1 non-coding downstream 1106307 39230526 ~ 39282273 (-)
XLOC_038046 NA non-coding downstream 1679359 38708463 ~ 38709221 (-)
XLOC_038063 BX323586.2 non-coding upstream 458265 40943119 ~ 41025062 (-)
XLOC_038066 CT737230.1 non-coding upstream 587966 41072820 ~ 41072935 (-)

Expression


Co-expression Network