XLOC_038056 (bard1)


Basic Information

Item Value
gene id XLOC_038056
gene name bard1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 40617215 ~ 40683768 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074640
GCGTAAATTCGCTAAACCTCGCCGCTTCTCTTCCTGCTTTGTTGGCGCGATATATAAACTACTTATGTTTACAGTCCTGTCATATGGGTCGCATTGTGCTGATGTGCTACAACAAACAACATCGGGAAAACTTGACATACTGTACGGTGAAAAGTTTACACTGCTGCAATATCTTCTGCTGTACGCACGATGGTCTCGTGCAGGATCTGGTGAAGTTAGTTCCTCAGTCCTGCTCCAGTGAAAGACTTTCATAATTCCAGACAGCAGAAACAGAGCAGAGTCTTTCTTCAAGCTGGAGTCCTTTCTGAACCTATCAGATTCCTCAACCACGGCCAAAGATGCCGCCCAGTTGGGGGAAATGTTTGTCCCTAATAACAAGAAGAACATGAGGATCTGGTTTAGTCCAAAGAGTCGCAAAGTCCGCTGCTGCATCCACAGACCTGTTGAGTTAAACACACCCAATGGAGTCCAACAAAAGAAAAGCACTGCGTCACCTTCTTCCGAGGATCTCGCGGTCTTCAACTTCAGCTCCTCCTCTCAGGAGTCAGGACCCTCCACTCCTCCACGGGCCAAGATGAACAAGAAAACCAAGAAAAAAAGGATCGGCCAAAACAGCAGGCAAGCTAAAGCCGCTCAAAGGCCCAGAACATGGATTCGTTCATTGCAGGAACGTAAGAAGCTCAAGCTAGAAGTGATCAATAAGCAGTGGAACACTGGAGAAGAAGCTGATGTAGACGCTATAGACGAAACCGGTGATGAGGATGAGAAAATGAGCTCTGGGGATGACAACAGGAAGCCTGCTAAAAGAGTTTTCTTCCGCCTCCCTCACAGTCAGTCTGAAGAAACTTTTAAACCTTCTCAACAAAGAAATCTCACTCCTAATCATGAAAAAATCGTGGAATTTAAAGACTCAGAGCAGCAAAACTCTGCAGCTTTGAGTTTACCAGATCATGACCAACAGCCAATTGCTGAAATTTCACCAGAACTGAATGAAAATGAGCTTCTTCAGCCTTCTTTTTCTAGAGTACGTAAGAGATCCAGTTCAGAGAGTTTACCGAAACAACCCAGAATTACTCCAGAACCAAAGAGGAGATCATCTGGAGAAGGAGCTGCTTTAATTGAAGACTCCTCTCAGAGTCTGAAAACTTTCAGACCGACCAATGAGAAGCCAGTGCTGTCATCTTTAGGGACTCATGATGTTTTGAAGAAATCTCCAGATGTGAGACACAAACAGACCTGTCCCGTTTACATGAAGAGGAACCATAAAGGAGAAACAGCACTGCACTTAGCTGCTTCAAAGGGTGATGTGGAGGGGGTCCGTAAGCTCCTTGCTCAGGGAGCCGACCCCAACCTGAAGGACAATGCAGGCTGGACACCGCTGCACGAGGCCTGCAATGTGGGTCACCTAGGAGTGGTGGAGGAGCTCcttcagcagggggcgctgttgaACACACCCGGCTATCAGAACGACTCTCCGCTACATGACGCCATCAGGAGTGGTCACATAGCAGTAGTCAAACTCTTGGTGGAACGAGGTGCATCTCAAAGTGTTCTTAATATCTTTGGCCTGCGGCCGGTGGATTATGCGCTGACTCCAGAAATGAAAGAGGTCCTAAGAGTGGCCCCAGAGGCATCACATCTCATAACAACATCCTTAAGGCCCCCTGCAAGTAAGGCTGCGGGCGGTGTGGTTCTGATTGGCAGTGAACTGACGCAGACTCAGCACAAGCAGATCAACAGAGCAGCTCAACTCCTTGGAGGAAAGCAGGCAAAGGCCTTTTCCAGTGCAGTCACCCATGTGGTTGTACCAGATGTACCCATCATGCCCTCTACACTGACCACACTGCATGGAGTCCTCAATGGCTGCTGGATCCTCAACTTCAGCTGGCTGAGCTGTAGCCTGCAGGCAGGCAGCTGGGTCAAGGAAAGCGGGTATGAGGCAGGTGATGGACCCCTGCGTGCCCGCGCCAACAGAGGCAGCCTGCTGCCTCCGCTCTTCGACGGCTGCTTCTTCTACATGCTGGGCTCCTTCCGCAAACCACCAAAAGATGAACTCCTCCAGTTAGTGAAAGCAGGAGGAGGTCAGCTTCTGAAACGCCTGCCCAAACCTGACAGCGACGTCACACAAACCCTGAACGCAGCAGCCTACCACGCTCAGGCTGGATCAGACCAGGTTTTGTGCACCCAGTACATCCTATACGATCCTCAGAGCTCCTACAAGCCCCAGAAGGTCAGGTTAGCTCCAGAGGGGTTTTTAAGACGTCGCCTGACCGTTCAAGCACTCCCGTCGCAAACACTGCGCAGGCTTCCACCAGTCCCCGCTGTGGCACCGACAGATGGTGCAGTCGTCCACCTTCACTTCAATGCCAGCTGGGATGATCGTCGTTCCAGCGAAGCAATTTGGACCTGTCGCATGGGGTAA
>TCONS_00074641
GCGATATATAAACTACTTATGTTTACAGTCCTGTCATATGGGTCGCATTGTGCTGATGTGCTACAACAAACAACATCGGGAAAACTTGACATACTGTACGGTGAAAAGTTTACACTGCTGCAATATCTTCTGCTGTACGCACGATGGTCTCGTGCAGGATCTGGTGAAGTTAGTTCCTCAGTCCTGCTCCAGTGAAAGACTTTCATAATTCCAGACAGCAGAAACAGAGCAGAGTCTTTCTTCAAGCTGGAGTCCTTTCTGAACCTATCAGATTCCTCAACCACGGCCAAAGATGCCGCCCAGTTGGGGGAAATGTTTGTCCCTAATAACAAGAAGAACATGAGGATCTGGTTTAGTCCAAAGAGTCGCAAAGTCCGCTGCTGCATCCACAGACCTGTTGAGTTAAACACACCCAATGGAGTCCAACAAAAGAAAAGCACTGCGTCACCTTCTTCCGAGGATCTCGCGGTCTTCAACTTCAGCTCCTCCTCTCAGGAGTCAGGACCCTCCACTCCTCCACGGGCCAAGATGAACAAGAAAACCAAGAAAAAAAGGATCGGCCAAAACAGCAGGCAAGCTAAAGCCGCTCAAAGGCCCAGAACATGGATTCGTTCATTGCAGGAACGTAAGAAGCTCAAGCTAGAAGTGATCAATAAGCAGTGGAACACTGGAGAAGAAGCTGATGTAGACGCTATAGACGAAACCGGTGATGAGGATGAGAAAATGAGCTCTGGGGATGACAACAGGAAGCCTGCTAAAAGAGTTTTCTTCCGCCTCCCTCACAGTCAGTCTGAAGAAACTTTTAAACCTTCTCAACAAAGAAATCTCACTCCTAATCATGAAAAAATCGTGGAATTTAAAGACTCAGAGCAGCAAAACTCTGCAGCTTTGAGTTTACCAGATCATGACCAACAGCCAATTGCTGAAATTTCACCAGAACTGAATGAAAATGAGCTTCTTCAGCCTTCTTTTTCTAGAGTACGTAAGAGATCCAGTTCAGAGAGTTTACCGAAACAACCCAGAATTACTCCAGAACCAAAGAGGAGATCATCTGGAGAAGGAGCTGCTTTAATTGAAGACTCCTCTCAGAGTCTGAAAACTTTCAGACCGACCAATGAGAAGCCAGTGCTGTCATCTTTAGGGACTCATGATGTTTTGAAGAAATCTCCAGATGTGAGACACAAACAGACCTGTCCCGTTTACATGAAGAGGAACCATAAAGGAGAAACAGCACTGCACTTAGCTGCTTCAAAGGGTGATGTGGAGGGGGTCCGTAAGCTCCTTGCTCAGGGAGCCGACCCCAACCTGAAGGACAATGCAGGCTGGACACCGCTGCACGAGGCCTGCAATGTGGGTCACCTAGGAGTGGTGGAGGAGCTCcttcagcagggggcgctgttgaACACACCCGGCTATCAGAACGACTCTCCGCTACATGACGCCATCAGGAGTGGTCACATAGCAGTAGTCAAACTCTTGGTGGAACGAGGTGCATCTCAAAGTGTTCTTAATATCTTTGGCCTGCGGCCGGTGGATTATGCGCTGACTCCAGAAATGAAAGAGGTCCTAAGAGTGGCCCCAGAGGCATCACATCTCATAACAACATCCTTAAGGCCCCCTGCAAGTAAGGCTGCGGGCGGTGTGGTTCTGATTGGCAGTGAACTGACGCAGACTCAGCACAAGCAGATCAACAGAGCAGCTCAACTCCTTGGAGGAAAGCAGGCAAAGGCCTTTTCCAGTGCAGTCACCCATGTGGTTGTACCAGATGTACCCATCATGCCCTCTACACTGACCACACTGCATGGAGTCCTCAATGGCTGCTGGATCCTCAACTTCAGCTGGCTGAGCTGTAGCCTGCAGGCAGGCAGCTGGGTCAAGGAAAGCGGGTATGAGGCAGGTGATGGACCCCTGCGTGCCCGCGCCAACAGAGGCAGCCTGCTGCCTCCGCTCTTCGACGGCTGCTTCTTCTACATGCTGGGCTCCTTCCGCAAACCACCAAAAGATGAACTCCTCCAGTTAGTGAAAGCAGGAGGAGGTCAGCTTCTGAAACGCCTGCCCAAACCTGACAGCGACGTCACACAAACCCTGAACGCAGCAGCCTACCACGCTCAGGCTGGATCAGACCAGGTTTTGTGCACCCAGTACATCCTATACGATCCTCAGAGCTCCTACAAGCCCCAGAAGGTCAGGTTAGGTAAGGTTTGGTCAGCCCCATCCACGTGGCTTCTGGACTGCATAGCTGCCTTTCGACTCCTACCCGTGCCGGAGCCCTAA
>TCONS_00074642
TGGGGAAATGGAAGCTTTAAAATGGCCGCTGTCCCTACATCCAGGTTTGGTTGTTTTGGAGGTGACCCAGAATCACGAGGCCTGCAATGTGGGTCACCTAGGAGTGGTGGAGGAGCTCcttcagcagggggcgctgttgaACACACCCGGCTATCAGAACGACTCTCCGCTACATGACGCCATCAGGAGTGGTCACATAGCAGTAGTCAAACTCTTGGTGGAACGAGGTGCATCTCAAAGTGTTCTTAATATCTTTGGCCTGCGGCCGGTGGATTATGCGCTGACTCCAGAAATGAAAGAGGTCCTAAGAGTGGCCCCAGAGGCATCACATCTCATAACAACATCCTTAAGGCCCCCTGCAAGTAAGGCTGCGGGCGGTGTGGTTCTGATTGGCAGTGAACTGACGCAGACTCAGCACAAGCAGATCAACAGAGCAGCTCAACTCCTTGGAGGAAAGCAGGCAAAGGCCTTTTCCAGTGCAGTCACCCATGTGGTTGTACCAGATGTACCCATCATGCCCTCTACACTGACCACACTGCATGGAGTCCTCAATGGCTGCTGGATCCTCAACTTCAGCTGGCTGAGCTGTAGCCTGCAGGCAGGCAGCTGGGTCAAGGAAAGCGGGTATGAGGCAGGTGATGGACCCCTGCGTGCCCGCGCCAACAGAGGCAGCCTGCTGCCTCCGCTCTTCGACGGCTGCTTCTTCTACATGCTGGGCTCCTTCCGCAAACCACCAAAAGATGAACTCCTCCAGTTAGTGAAAGCAGGAGGAGGTCAGCTTCTGAAACGCCTGCCCAAACCTGACAGCGACGTCACACAAACCCTGAACGCAGCAGCCTACCACGCTCAGGCTGGATCAGACCAGGTTTTGTGCACCCAGTACATCCTATACGATCCT

Function

symbol description
bard1 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in protein K6-linked ubiquitination. Predicted to be part of BRCA1-A complex and BRCA1-BARD1 complex. Human ortholog(s) of this gene implicated in breast cancer and ovarian cancer. Orthologous to human BARD1 (BRCA1 associated RING domain 1).

GO:

id name namespace
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0031436 BRCA1-BARD1 complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03019 Messenger RNA biogenesis
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-5883 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in protein K6-linked ubiquitination. Predicted to be part of BRCA1-A complex and BRCA1-BARD1 complex. Human ortholog(s) of this gene implicated in breast cancer and ovarian cancer. Orthologous to human BARD1 (BRCA1 associated RING domain 1).

Ensembl:

ensembl_id ENSDARG00000076733

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074640 False 2422 mRNA 0.50 11 40617215 40683768
TCONS_00074641 False 2274 mRNA 0.50 10 40634521 40683722
TCONS_00074642 True 898 mRNA 0.55 7 40634635 40664923

Neighbor

gene id symbol gene type direction distance location
XLOC_038055 CU367848.1 coding downstream 107572 40509529 ~ 40509643 (-)
XLOC_038054 NA coding downstream 132361 40388580 ~ 40484854 (-)
XLOC_038053 BX936447.1 coding downstream 231968 40385130 ~ 40385247 (-)
XLOC_038052 NA coding downstream 267046 40080890 ~ 40350169 (-)
XLOC_038051 ikzf2 coding downstream 543960 39960118 ~ 40073255 (-)
XLOC_038058 abca12 coding upstream 1845 40685613 ~ 40765868 (-)
XLOC_038059 CR932999.1 coding upstream 83287 40767055 ~ 40777341 (-)
XLOC_038060 si:dkey-95p16.1 coding upstream 145701 40829469 ~ 40846447 (-)
XLOC_038061 pofut2 coding upstream 167320 40851088 ~ 40873934 (-)
XLOC_038062 BX323586.3 coding upstream 243509 40927277 ~ 40935934 (-)
XLOC_038050 NA non-coding downstream 677599 39910696 ~ 39939616 (-)
XLOC_038063 BX323586.2 non-coding upstream 259351 40943119 ~ 41025062 (-)
XLOC_038066 CT737230.1 non-coding upstream 389052 41072820 ~ 41072935 (-)
XLOC_038068 NA non-coding upstream 411678 41095446 ~ 41101432 (-)
XLOC_038070 NA non-coding upstream 486834 41170602 ~ 41172834 (-)

Expression


Co-expression Network