G1929582


Basic Information

Item Value
gene id G1929582
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39413508 ~ 39456657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2206797
aagagACAGGtgtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtgtatagttctagtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcaacTAATgacaacaagataactaatgtaaaacacACTTTCTCTGTAAAACCTACATAGATTCAGATGTTTTGTGAAAGTTCATAGTTCGACAGATATGGCACATAGAAATCACAACCAGACGGACATCACCAATAGATGGGAGAAGTTGAGGGTAGCCGAATGACTGGATTAAAAACAAACCAAAtacaactattg
>TU2206796
gtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaggaagggagctcTTGTTAATTACATTTGCACAGTTAATATTCCTTTTTCATCAGCAAATGATGTGGATCAATactctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatatttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtgtagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtgtatagttctagtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcaacTAATgacaacaagataactaatgtaaaacacACTTTCTCTGTAAAACCTACATAGATTCAGATGTTTTGTGAAAGTTCATAGTTCGACAGATATGGCACATAGAAATCACAACCAGACGGACATCACCAATAGATGGGAGAAGTTGAGGGTAGCCGAATGACTGGATTAAAAACAAACCAAAtacaactattg
>TU2206795
gttctggtcagtgttgtagtatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgatgtagtatatatagttctggtcagtgttgtagtatatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctagtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggacagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatatagttctggtcagtgttgtagtgtatagttatggtcagtgttgtagtatatatagttatggtcagtgttgtagtgtgtagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtatatatagttctggtcagtgttgtagtgtatagttctggtcagtgttgtagtatatatagttctggtcagtgttg

Function

NR:

description
Coagulation factor V

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2206797 False 531 lncRNA 0.37 2 39413508 39456657
TU2206796 False 958 lncRNA 0.39 4 39444649 39456657
TU2206795 True 1538 lncRNA 0.36 2 39450870 39454740

Neighbor

gene id symbol gene type direction distance location
LOC110516717 LOC106581405 coding upstream 63127 39238180 ~ 39350381 (+)
LOC110503192 LOC106613220 coding upstream 178469 39207177 ~ 39235039 (+)
LOC110503486 LOC106613381 coding upstream 316796 39091519 ~ 39096712 (+)
LOC118944042 LOC106590898 coding upstream 322275 39087111 ~ 39091233 (+)
spred3 spred3 coding upstream 363832 39020800 ~ 39049676 (+)
LOC110503201 NA coding downstream 174006 39630663 ~ 39632379 (+)
trnat-agu-148 NA coding downstream 308002 39764659 ~ 39764732 (+)
LOC110503199 LOC106613203 coding downstream 344080 39800737 ~ 39809748 (+)
LOC110503406 LOC106581179 coding downstream 987113 40443770 ~ 40535727 (+)
LOC110503211 LOC106613213 coding downstream 1353521 40810178 ~ 40837501 (+)
G1929560 NA non-coding upstream 13869 39378049 ~ 39399639 (+)
G1929564 NA non-coding upstream 22952 39389334 ~ 39390556 (+)
G1929562 NA non-coding upstream 25371 39384958 ~ 39388137 (+)
G1929530 NA non-coding upstream 101534 39311512 ~ 39311974 (+)
G1929526 NA non-coding upstream 122173 39287698 ~ 39291335 (+)
G1929639 NA non-coding downstream 49282 39505939 ~ 39506415 (+)
G1929649 NA non-coding downstream 70798 39527455 ~ 39528677 (+)
G1929688 NA non-coding downstream 150330 39606987 ~ 39608054 (+)
G1929689 NA non-coding downstream 152089 39608746 ~ 39609637 (+)
bicra LOC106613370 other upstream 480959 38845482 ~ 38932575 (+)
ppp1r13l ppp1r13l other upstream 778116 38590146 ~ 38653011 (+)
G1929196 NA other upstream 900403 38509846 ~ 38513105 (+)
G1929037 NA other upstream 1214984 38197898 ~ 38198524 (+)
G1929664 NA other downstream 91155 39547812 ~ 39549780 (+)
G1929808 NA other downstream 417621 39874278 ~ 39877275 (+)
G1929816 NA other downstream 431670 39888327 ~ 39889155 (+)
G1929891 NA other downstream 569278 40025935 ~ 40028517 (+)
G1929901 NA other downstream 592707 40049364 ~ 40082173 (+)

Expression


Co-expression Network