G1929649


Basic Information

Item Value
gene id G1929649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39527455 ~ 39528677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2206883
gctgtagtgttgttttgtagtgtagtgttgtattgtagctgtagtgtagtgctgtattgtagctgtagtgtagcgctgtattgtagctgtagtgctgtattgtagctgtagtgtagtgttgtactgtagttgtagtgttgtattgtagctgtattgtagtgttgtattgtagctgtagtgttgtattgtagctgtagtgtagtgttgtattgtagctgtagtgtggtgttgtattgtagctgtagtg
>TU2206882
gctgtattgtagctgtagtgttgtattgtagctgtattgtagtgttgtattgtagctgtagtgttgtattgtagctgtagtgtagtgttgtattgtagctgtagtgtggtgttgtattgtaggtgtagtgttgtattgtagctgtagtgtagtgttgtattgtagctgtagtgtagtgctgtattgtagctgtagtgctgtattgtagctgtagtgtagtgctgtattgtagctgtagtgtagtgctgtattgtagctgtagtgctgtattgtagctgtagtgtagtgctgtattgtagctgtagtgctgtattgtagctgtagtgtagtgctgtattgtagctgtagttttgcattgtagctgtagtgtagtgctgtattgTAGCTGTAATGTAGTgctgtattgtagctgtagtgtagtactgtattgtagctgtagtgctgtattgtagctgtagtgtagtattgtagctgtagtgttgtattgtagctgtattgtagctgtattgtagctgtagtgtagtgctctattgtagctgtagtgtagtgctgtattgcagctgtagtgtagctgtattgcagctgtagtgtagctgtattgtagctgtagtgttgtattgtagctgtagtgtagtgctgtattgtaaatgttgtgttgtattgtagctgtagtgttgtattgtagctgtagtgttgtattgtagcggtagtgtagtgctgtattgtagctgtagtgtagtgctgtattgtagctgtagtgtagtactgtat

Function

NR:

description
PREDICTED: prisilkin-39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2206883 False 247 lncRNA 0.39 2 39527455 39527885
TU2206882 True 771 lncRNA 0.40 3 39527626 39528677

Neighbor

gene id symbol gene type direction distance location
LOC110516717 LOC106581405 coding upstream 177074 39238180 ~ 39350381 (+)
LOC110503192 LOC106613220 coding upstream 292416 39207177 ~ 39235039 (+)
LOC110503486 LOC106613381 coding upstream 430743 39091519 ~ 39096712 (+)
LOC118944042 LOC106590898 coding upstream 436222 39087111 ~ 39091233 (+)
spred3 spred3 coding upstream 477779 39020800 ~ 39049676 (+)
LOC110503201 NA coding downstream 101986 39630663 ~ 39632379 (+)
trnat-agu-148 NA coding downstream 235982 39764659 ~ 39764732 (+)
LOC110503199 LOC106613203 coding downstream 272060 39800737 ~ 39809748 (+)
LOC110503406 LOC106581179 coding downstream 915093 40443770 ~ 40535727 (+)
LOC110503211 LOC106613213 coding downstream 1281501 40810178 ~ 40837501 (+)
G1929639 NA non-coding upstream 21040 39505939 ~ 39506415 (+)
G1929582 NA non-coding upstream 70798 39413508 ~ 39456657 (+)
G1929560 NA non-coding upstream 127816 39378049 ~ 39399639 (+)
G1929564 NA non-coding upstream 136899 39389334 ~ 39390556 (+)
G1929562 NA non-coding upstream 139318 39384958 ~ 39388137 (+)
G1929688 NA non-coding downstream 78310 39606987 ~ 39608054 (+)
G1929689 NA non-coding downstream 80069 39608746 ~ 39609637 (+)
G1929697 NA non-coding downstream 105870 39634547 ~ 39634764 (+)
G1929698 NA non-coding downstream 108089 39636766 ~ 39637334 (+)
bicra LOC106613370 other upstream 594906 38845482 ~ 38932575 (+)
ppp1r13l ppp1r13l other upstream 892063 38590146 ~ 38653011 (+)
G1929196 NA other upstream 1014350 38509846 ~ 38513105 (+)
G1929037 NA other upstream 1328931 38197898 ~ 38198524 (+)
G1929664 NA other downstream 19135 39547812 ~ 39549780 (+)
G1929808 NA other downstream 345601 39874278 ~ 39877275 (+)
G1929816 NA other downstream 359650 39888327 ~ 39889155 (+)
G1929891 NA other downstream 497258 40025935 ~ 40028517 (+)
G1929901 NA other downstream 520687 40049364 ~ 40082173 (+)

Expression


Co-expression Network