G1929758


Basic Information

Item Value
gene id G1929758
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39812190 ~ 39814400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2207020
AAAAATGTAATATCATAATAAATACAATCTACAACGTAGAGAAGAGGAGTTATTTTCCTTTCTGCACCACTTCAGTTTATAACGTGTCATAATGAAACAGACCAGATAAAAACATGGACATGTTCAACCCATAAAAATAATCAAATCCAGACAATGGTTCTGAACCGCAAAAACAGCAACATACAGAATATAAAATAATAGTTCAAATTAATCACAATCGTCATTATTATCCACCCTTTATAAAATGTAAACTGCAAAAGCCAAACTGTGTTTCCACGGTCAAGCAGCTACGTCAGACACTAatccaaaaaatatatttaaataactAAAAAAAGACAGAAGTAAGAAAACACTTGAAATGCAGCTGAAGGAATAAGATTGAGATGGTCAGTCATGATTTTTTATTCCTGTGGTAATGTAGTTAGTTCCCTTTAGGAGGACTGTGAATACAGCATTTACCCAGACGACACAGAGATGATAGGGTCTGTCTGCATGCTCTCCTTGGAGGAgcaggaacgtgtgtgtgtgtgtgtgtgtgtgtgcaggtgtgtgtgtgtaacaataAGTAACAACACTTGAATGAAAACTCTGAATAGTGTATCTGTAGTGCTTTATCTGTGGGGGCAAAAGAGCCGAGTTGATTATTCTACTAACTTAGCCTTTGTCTGTTGCTAGGCAATCGTCACAAGGCAGGAAGTGAGGTCATGGCTTGAGATAAATGCCACATGGAGTAGGATGCCACTGATCAATGGTCAGTGTAGCTGGGAGGgtcaactgatcctagatctgtgacaCGCCAGGAGAGAGGAAGTCACAGGACAAAGCAAACCTCACCCAAAATGTCTGGGACTGATTTAAGTGTGTCAAAAGAGGCACTGAAAATTACTGGCAAACCCACATCCTGAcactgtccctgaccctgtccctgactctgaccctgtccctgaccctgtcccggactctgtccctgaccctgtccctttcctttccctgtCACGACCATCCTCTGTACACATCTAAGAGCTTCAATAAAAACAGGGCAATTCACCTTGTCTATTCACAGCcctatgtacatatacagtatacagccaTTTACACAGCcatatgtaaatatatacagcCATTTACACAGCCGTATGTAAATATATACAGCCATTTACAAAGCCGTATGTAAATATATACAGCCATTTACACAGCcatatgtaaatatatacagcCATTTACACAGCCGTATGTAAATATATACAGCCATTTACACAGCCGTATGTAAATATATACAGCCATTTA
>TU2207021
AAAAATGTAATATCATAATAAATACAATCTACAACGTAGAGAAGAGGAGTTATTTTCCTTTCTGCACCACTTCAGTTTATAACGTGTCATAATGAAACAGACCAGATAAAAACATGGACATGTTCAACCCATAAAAATAATCAAATCCAGACAATGGTTCTGAACCGCAAAAACAGCAACATACAGAATATAAAATAATAGTTCAAATTAATCACAATCGTCATTATTATCCACCCTTTATAAAATGTAAACTGCAAAAGCCAAACTGTGTTTCCACGGTCAAGCAGCTACGTCAGACACTAatccaaaaaatatatttaaataactAAAAAAAGACAGAAGTAAGAAAACACTTGAAATGCAGCTGAAGGAATAAGATTGAGATGGTCAGTCATGATTTTTTATTCCTGTGGTAATGTAGTTAGTTCCCTTTAGGAGGACTGTGAATACAGCATTTACCCAGACGACACAGAGATGATAGGGTCTGTCTGCATGCTCTCCTTGGAGGAgcaggaacgtgtgtgtgtgtgtgtgtgtgtgtgcaggtgtgtgtgtgtaacaataAGTAACAACACTTGAATGAAAACTCTGAATAGTGTATCTGTAGTGCTTTATCTGTGGGGGCAAAAGAGCCGAGTTGATTATTCTACTAACTTAGCCTTTGTCTGTTGCTAGGCAATCGTCACAAGGCAGGAAGTGAGGTCATGGCTTGAGATAAATGCCACATGGAGTAGGATGCCACTGATCAATGGTCAGTGTAGCTGGGAGGgtcaactgatcctagatctgtgacaCGCCAGGAGAGAGGAAGTCACAGGACAAAGCAAACCTCACCCAAAATGTCTGGGACTGATTTAAGTGTGTCAAAAGAGGCACTGAAAATTACTGGCAAACCCACATCCTGAcactgtccctgaccctgtccctgaccctgtccctgactctgaccctgtcccggactctgtccctgaccctgtcccggactctgtccctgaccctgtcccggactctgtccctgaccctgtccctgaccctgtcccggactctgtccctgaccctgtccctttcctttccctgtCACGACCATCCTCTGTACACATCTAAGAGCTTCAATAAAAACAGGGCAATTCACCTTGTCTATTCACAGCcctatgtacatatacagtatacagccaTTTACACAGCcatatgtaaatatatacagcCATTTACACAGCCGTATGTAAATATATACAGCCATTTACAAAGCCGTATGTAAATATATACAGCCATTTACACAGCcatatgtaaatatatacagcCATTTACACAGCCGTATGTAAATATATACAGCCATTTACACAGCCGTATGTAAATATATACAGCCATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2207020 False 1287 lncRNA 0.40 3 39812190 39814400
TU2207021 True 1371 lncRNA 0.42 4 39812190 39814400

Neighbor

gene id symbol gene type direction distance location
LOC110503199 LOC106613203 coding upstream 2442 39800737 ~ 39809748 (+)
trnat-agu-148 NA coding upstream 47458 39764659 ~ 39764732 (+)
LOC110503201 NA coding upstream 179811 39630663 ~ 39632379 (+)
LOC110503405 NA coding upstream 182979 39396023 ~ 39629211 (+)
LOC110516717 LOC106581405 coding upstream 461809 39238180 ~ 39350381 (+)
LOC110503406 LOC106581179 coding downstream 629370 40443770 ~ 40535727 (+)
LOC110503211 LOC106613213 coding downstream 995778 40810178 ~ 40837501 (+)
LOC110503202 LOC106613212 coding downstream 1148042 40962442 ~ 40972379 (+)
si LOC106613210 coding downstream 1198278 41012678 ~ 41125378 (+)
LOC118944044 NA coding downstream 1452367 41266767 ~ 41267279 (+)
G1929753 NA non-coding upstream 32671 39779144 ~ 39779519 (+)
G1929727 NA non-coding upstream 84229 39727631 ~ 39727961 (+)
G1929726 NA non-coding upstream 86240 39723258 ~ 39725950 (+)
G1929724 NA non-coding upstream 88994 39720872 ~ 39723196 (+)
G1929710 NA non-coding upstream 132626 39679289 ~ 39679564 (+)
G1929809 NA non-coding downstream 58791 39873191 ~ 39925528 (+)
G1929815 NA non-coding downstream 70619 39885019 ~ 39886406 (+)
G1929840 NA non-coding downstream 107851 39922251 ~ 39922705 (+)
G1929847 NA non-coding downstream 117333 39931733 ~ 39931937 (+)
G1929848 NA non-coding downstream 117958 39932358 ~ 39932801 (+)
G1929664 NA other upstream 262410 39547812 ~ 39549780 (+)
spred3 spred3 other upstream 763497 39020800 ~ 39049676 (+)
bicra LOC106613370 other upstream 879641 38845482 ~ 38932575 (+)
ppp1r13l ppp1r13l other upstream 1176798 38590146 ~ 38653011 (+)
G1929196 NA other upstream 1299085 38509846 ~ 38513105 (+)
G1929808 NA other downstream 59878 39874278 ~ 39877275 (+)
G1929816 NA other downstream 73927 39888327 ~ 39889155 (+)
G1929891 NA other downstream 211535 40025935 ~ 40028517 (+)
G1929901 NA other downstream 234964 40049364 ~ 40082173 (+)
G1929909 NA other downstream 262076 40076476 ~ 40078332 (+)

Expression


Co-expression Network