G1929808


Basic Information

Item Value
gene id G1929808
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 39874278 ~ 39877275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2207080
CAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTTCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGAAATCCACATGGTTCCACAGTCAACCCAATATGACATCCACATGGTTCCACAGTCAACCCAATATGACATCACATGGTTCCACAGTCAACCcaatatgacatcacaataacacaGATAGAATAACCAACTAGAATTCCACACTTGGCTAAAGTTTCAGAGCACTTACACAGACACAGGTTGCTCCACTAATATACgtctacacagagacacagctagcAGCAGACGAGTATCAAACGACCAGGTTATCCGAttatatttgagtcatttagcagacgctcttatccagagtaacatacaggagcaattaggattgTGCCTCGTTCAAAGCACATCGACATATTTTTTTTCCACCTAGGTCGGCATGAGGATTTGAATCAGcggcctttcggttactggcccaacactcttaaccgctatgCTACCTGTCGCGCCCGATTATCCGTTAGCCTCTTCATTGGCTCACAATGGGGGAATTAGCCTAATGCTGATACATTTGGTTGGAGTGGTTGAAGGTGATGTCCCCAGATGGTTTGTAGGGGAGTTCTCTTGGCTTGGAGAGATTAAACACTATCACCACCCTGAACCGGAGGgcactggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagctccTGTAAATCATCTATTTggggtaaagaaagagagaaaaacacattTATAAATTAAGTGCTGTAAAAAGACAGAAATAAAATCTAAAACATAAATACTGTACAAACATACCTCTTCTACTACAGCTCCCTAAAACAAATGCTTTAAAACACACGTCACTGCGGGAGTGGGATGTTGTTTCTCTTTAAATAGAACAAAAAATCTTGAAAATTATAAACACAAAAGTGATTTTAGGTGTGAGAACTagttgtatgtgtatgtttgtcaTAGGCTATGGAGAGACGAGCTGTGTTTTGTTCGAACGAGtgaagaaagtgtgtgtgtgtgtgcgtgtatgtttaTATAGTCTTAGTAGGTACCCTTGCCATATATTGCACATCGGTTACTTTTATGTTTACTCTTTAGTTTCCTTGTTCAGAGAACAGAGACGTTTAGTGTTCACTCCTTGTTCCAtccatttctcctctcctccctaggaTGGCCTTGTtccatttctcctctcctccctaggaTGGCCTTGTtccatttctcctctccttcctaggATGGAGTGTTAGGATGGCCTTGTtccatttctcctctcctccctaggaTGGAGTGTTAGAATGGCCTTGTtccatttctcctctcctccctaggaTGGAGTGTTAGGATGGCCTTGTtccatttctcctctcctccctaggaTGGCCTTGTtccatttctcctctcctccttaggATGGAGTGTTAGGATGGCCTTGTtccatttctcctctcctccctaggaTGGAGTGTTAGGATGGCCTTGTTccatttctcctctctttcctagGATGGAGTGTTAGGATGGCCTTGTTCCATTTCTCATCTCTTCCCTAGGATGGCCTTGTtccatttctcctctcctccctaggaTGGAGTGTTAGAATGGCCTTGTTCCATTTTTACTTCCATCAGTCCATCATTTGGCTTGTTGCAGAATTCACAATCTTCTTCCCATCAGTAGCCTTTCACCCTGTCTGCCTCAaccgctctctctttccttctctctccctatccttcaCCTAATCGGTCTGTCCTTATCCACACTTTTCTCTGGTCACTGTCCcaatctcttgctctctctctctttctctccctctctttccctctctctcacttgttccctccctctctcctagtaAAGTCTGTAGAGACAGAGTCCATGCTGAAACACCAGACACATCACTCAGTGATTAACAACACAGACAGTTGCATCAGAAcaaactaaaacaacaacagaaaccTGGTTTGAAAGCGACCCTGTAGTTTTTCAGCCTGGGCTAACAACACCCATGCACAGAGAGATCAGAAGACGGAGAAAATAACTGGACCTAATAAAAACGGGGGTGGGTTTTGAGGCGGAGGGGTTGGGTTTATGTGTGGTTTTTGCTGAGGGTGGGGTTCAAATGGGTCGGGGGACTCTCATTGGCTCAGACCCGGGGCAAGGGGCTTGGCCTCACATCCTCCAGGGCAGTATGTTGCTGGTGCTGAAGGGGTGGGTTTTGATAAATGGGGCCGGCTGATTGGCTCAGACCCTCCACAGCAGTAAGTGGTTGGTACTGTCGTCCCGCCCCACTGTCTCACTGCTATTTGTCAGCCGGAAGTCCTCATAGCCATCGCCACCGGAGATCACCAACTGATTGGTTTTAACGGGCAGGAGGGCGGAGGCTCGACGGCGAGCGGAATCTCGCCTCTGCAGACCCCCATTACCCCCTTCAACACCACTCTGG

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2207080 True 2767 TUCP 0.46 2 39874278 39877275

Neighbor

gene id symbol gene type direction distance location
LOC110503199 LOC106613203 coding upstream 64530 39800737 ~ 39809748 (+)
trnat-agu-148 NA coding upstream 109546 39764659 ~ 39764732 (+)
LOC110503201 NA coding upstream 241899 39630663 ~ 39632379 (+)
LOC110503405 NA coding upstream 245067 39396023 ~ 39629211 (+)
LOC110516717 LOC106581405 coding upstream 523897 39238180 ~ 39350381 (+)
LOC110503406 LOC106581179 coding downstream 566495 40443770 ~ 40535727 (+)
LOC110503211 LOC106613213 coding downstream 932903 40810178 ~ 40837501 (+)
LOC110503202 LOC106613212 coding downstream 1085167 40962442 ~ 40972379 (+)
si LOC106613210 coding downstream 1135403 41012678 ~ 41125378 (+)
LOC118944044 NA coding downstream 1389492 41266767 ~ 41267279 (+)
G1929758 NA non-coding upstream 59878 39812190 ~ 39814400 (+)
G1929753 NA non-coding upstream 94759 39779144 ~ 39779519 (+)
G1929727 NA non-coding upstream 146317 39727631 ~ 39727961 (+)
G1929726 NA non-coding upstream 148328 39723258 ~ 39725950 (+)
G1929724 NA non-coding upstream 151082 39720872 ~ 39723196 (+)
G1929815 NA non-coding downstream 7744 39885019 ~ 39886406 (+)
G1929840 NA non-coding downstream 44976 39922251 ~ 39922705 (+)
G1929847 NA non-coding downstream 54458 39931733 ~ 39931937 (+)
G1929848 NA non-coding downstream 55083 39932358 ~ 39932801 (+)
G1929853 NA non-coding downstream 63238 39940513 ~ 39940868 (+)
G1929664 NA other upstream 324498 39547812 ~ 39549780 (+)
spred3 spred3 other upstream 825585 39020800 ~ 39049676 (+)
bicra LOC106613370 other upstream 941729 38845482 ~ 38932575 (+)
ppp1r13l ppp1r13l other upstream 1238886 38590146 ~ 38653011 (+)
G1929196 NA other upstream 1361173 38509846 ~ 38513105 (+)
G1929816 NA other downstream 11052 39888327 ~ 39889155 (+)
G1929891 NA other downstream 148660 40025935 ~ 40028517 (+)
G1929901 NA other downstream 172089 40049364 ~ 40082173 (+)
G1929909 NA other downstream 199201 40076476 ~ 40078332 (+)
G1929916 NA other downstream 212125 40089400 ~ 40105532 (+)

Expression


Co-expression Network