G1929863


Basic Information

Item Value
gene id G1929863
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 40020748 ~ 40025121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2207150
TCTTACAGTAAATATTATACAATTACAAACGTGGCTTAGTTATGGTACAAAGATCACTATCTGATcttcaaaaaaacaacaactgagaTTTACACTTCATATCACAAGCCTGACATGGGTCTGCAACGCTGGACCAATAGCTAACAAACAATTCAGTTCACGCAACGTTGAGAAAACGTTGTGCCATGGTTTGCCTCAACTGTAGGGTAATGTTACCATTGTTTGTGCAAACTGGGTCCCAAACTTCAAGGGGGTTGTTCCTAAACTCGCTCCAGGGATAAAAGTATTTTGGAAGACGAGGAATTTCCACTTTTTTTTTGCATCATTTTCATTTTCAAATGATTATTTTAGAAATAATAGGCTGCAGAACAttgaggacccccccccccccaataagtCCTCGATACCTCCAACAGTTGGGTTTTAATTTGAGGAAACTGCTAAGACATGACCACTGATGCAGAGAAGAGTCAGAAAAAGAGAAGTGGGGTGTGTGTTTGAGGATATATTTCAACATAAACACCATTTTGACTTCCCATAGTTGTGAAGAAATGAATAGCACACAAAACATCAACAACAAATAAATAATTTAACATCTTTAAAAGGATCTTTAACTTCTTTTACATGGAATGATACAAAAAAGGTGAAGGAATCATAAGTTGATAGTGAACGAATAAAAATACCTTAAAATATATCCCCCTTTGAGCTCTGCAGGTAAGTGttaatcagggttggggtcaattccatttcaattcagagaACAAGTTGAAATTTAGTTACCTTCCTGAAATGACGGAGTAGAAgtggaattgaccccaaacctCCTGAAATCAAAAACACAGTCATGCGAACAAGTGAcatggtgtttgtgtgtgagagaaagtctGAAACGAGTCCCCTCGGAGCGAGTGTCTTAGCAGAACCGCTGAAACTTGTACCATAgaataataaaataccaaatcgCAGTTGAAACCTTAAATAACGCTCATGGTAACAAGTGCTCCATTTTACACGGCTCAGGAAATCCAACATTCTGCTTCCTGTTTTAGGCCGAGGTGTAGAATGTTGGCCGTTCCAAAATCACCCCCCCTGTTTTGTGTTGCTCTTAAAGGACATGATGGGTTTAAGAAACATGGTAATAGCTCCACCTACATTAGCCTTCTGGATGATTCAGTAGAGTTGAACAAccatccaatcctctcagatctacatGAGGTAGGGATGTTAGACTGGGCACCAGACTGTGGTGGTTTAGTGACACAACATCCATAGCTAAACATATTGGTTCCAGTCTGCCATTACACCTCACTTCTCATTCATCATTCTTCTGTTATGAAGAGATGAAGAGGGCTGCTCTTTACCAACACttaaaggggggtgggggggacagagagacagacagagagggggaagtaaaATTCAGGAAGAGAGAAACGCAGACCAGTTCCAAACCCAATGGCaggatatttttatttattttatttgacctttatttaactaggcaagtctgttaagaaaaaaactcattttcaatgacggcctaggaacagtgggataactgccttgttcaggggcagaacgacagatttatactgtgtcagctcggagattcgatcttgcaacctttcggttactagtccaaagctttaaccactaggctacgcccGGATATGGAGGTCATTAATAACCATGTTATGTTTGGGATTCGACAAAGACCAACAACTGGATTTTACAAGTAACTTATTAAATAACATTTACTAAAATTCACCACGGAGAAGGAAAGACAAACCAGAGAGTGTGAAGGACGGAGGGACAgcgtgagaaagggagagagagggagggagagagagacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgtgagagagggagagagagggagggagagagagacagcgtgagagagagggacagcgtgagagagggagagagagggagggagagagagacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgtgagagagagggagggagagggagggagagagagacagcgtgagagagagggacagcgtgagagagggagagagagggagggagagagagacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgtgagagagggggggtaatgTCTGATTTCTTAGATTCTAAAATGTAGGGTATTTCTTCATGTTGATTCATGTTGATTTCTTCATGTTGATGTGCATAAATAGACTGCATTGTGGTGCATGACGCTCCATGCTACACTACACCTGAAAATGAACCATCCCCACGCTCAAAAGACCACGGAAGGAAAAACACGCCATAGTTTTTTCTTAACCTCAATGTGAAACAACACTGAAATAGCGGTTGATTAAATAAATGCTCATGAACAACAATAAGCCATTTTCTTTTGTTGAGAATTATACTAACTAGTACAAACATTATCAGGACTAAGGACACCTTACTGAACGCTTGATATCTATTGGTTAGTTTTCTTAAACcgcctctctctgtttcactatGAGGTCTAGCTACCTGGTACCTAGTAGAAATTATTGTCGTCTGGTTATTTATTGTGCAACGCTTCCTCGTGAGATTATTACAATAACTCTGATATGTACTGCTGCCACCTCGGATTACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTGATTCAAAGGGATTGAAGCTGGATACAGAATCCATAATGCAGATTTAAGGATGACCAGAATTAGGATTTAAAAATTATTAattctaaatgactaaaataatgACTGTGCGGTAACTGTATAACGAGGCATGTTCTCTTATTATTGCAAGTAAACGACTTGATCTACTTCGATACACTGTAAATGCTTTGTAATGACCCGTGCCTCACAGATCCTGTGATTCATACTCATCTATTAAAACCCTGAAACATGGCACACACACCGTTCCCtgatgctctctcctctcct
>TU2207152
TCTTACAGTAAATATTATACAATTACAAACGTGGCTTAGTTATGGTACAAAGATCACTATCTGATcttcaaaaaaacaacaactgagaTTTACACTTCATATCACAAGCCTGACATGGGTCTGCAACGCTGGACCAATAGCTAACAAACAATTCAGTTCACGCAACGTTGAGAAAACGTTGTGCCATGGTTTGCCTCAACTGTAGGGTAATGTTACCATTGTTTGTGCAAACTGGGTCCCAAACTTCAAGGGGGTTGTTCCTAAACTCGCTCCAGGGATAAAAGTATTTTGGAAGACGAGGAATTTCCACTTTTTTTTTGCATCATTTTCATTTTCAAATGATTATTTTAGAAATAATAGGCTGCAGAACAttgaggacccccccccccccaataagtCCTCGATACCTCCAACAGTTGGGTTTTAATTTGAGGAAACTGCTAAGACATGACCACTGATGCAGAGAAGAGTCAGAAAAAGAGAAGTGGGGTGTGTGTTTGAGGATATATTTCAACATAAACACCATTTTGACTTCCCATAGTTGTGAAGAAATGAATAGCACACAAAACATCAACAACAAATAAATAATTTAACATCTTTAAAAGGATCTTTAACTTCTTTTACATGGAATGATACAAAAAAGGTGAAGGAATCATAAGTTGATAGTGAACGAATAAAAATACCTTAAAATATATCCCCCTTTGAGCTCTGCAGGTAAGTGttaatcagggttggggtcaattccatttcaattcagagaACAAGTTGAAATTTAGTTACCTTCCTGAAATGACGGAGTAGAAgtggaattgaccccaaacctCCTGAAATCAAAAACACAGTCATGCGAACAAGTGAcatggtgtttgtgtgtgagagaaagtctGAAACGAGTCCCCTCGGAGCGAGTGTCTTAGCAGAACCGCTGAAACTTGTACCATAgaataataaaataccaaatcgCAGTTGAAACCTTAAATAACGCTCATGGTAACAAGTGCTCCATTTTACACGGCTCAGGAAATCCAACATTCTGCTTCCTGTTTTAGGCCGAGGTGTAGAATGTTGGCCGTTCCAAAATCACCCCCCCTGTTTTGTGTTGCTCTTAAAGGACATGATGGGTTTAAGAAACATGGTAATAGCTCCACCTACATTAGCCTTCTGGATGATTCAGTAGAGTTGAACAAccatccaatcctctcagatctacatGAGGTAGGGATGTTAGACTGGGCACCAGACTGTGGTGGTTTAGTGACACAACATCCATAGCTAAACATATTGGTTCCAGTCTGCCATTACACCTCACTTCTCATTCATCATTCTTCTGTTATGAAGAGATGAAGAGGGCTGCTCTTTACCAACACttaaaggggggtgggggggacagagagacagacagagagggggaagtaaaATTCAGGAAGAGAGAAACGCAGACCAGTTCCAAACCCAATGGCaggatatttttatttattttatttgacctttatttaactaggcaagtctgttaagaaaaaaactcattttcaatgacggcctaggaacagtgggataactgccttgttcaggggcagaacgacagatttatactgtgtcagctcggagattcgatcttgcaacctttcggttactagtccaaagctttaaccactaggctacgcccGGATATGGAGGTCATTAATAACCATGTTATGTTTGGGATTCGACAAAGACCAACAACTGGATTTTACAAGTAACTTATTAAATAACATTTACTAAAATTCACCACGGAGAAGGAAAGACAAACCAGAGAGTGTGAAGGACGGAGGGACAgcgtgagaaagggagagagagggagggagagagagacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgtgagagagggagagagagggagggagagagagacagcgtgagagagagggacagcgtgagagagggagagagagggagggagagagagacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgtgagagagagggagagagggagagagagaccgcgtgagagagagggacagcgtgagagagggagagagagggagggagagagagacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgcgagagagggagagagagggagggagagagagacagcgtgagagagagggagagagagacagcgtgagagagagggacagcgtgagaaagggagagagagggagggagagagagacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgtgagagagggagagagagggagggagagagagacagcgtgagagagagggagagagagaccgcgtgagagagagggacagcgtgagagagagggacagcgtgagagagggagagagagggagggagagagggacagcgtgagagagggggggtaatgTCTGATTTCTTAGATTCTAAAATGTAGGGTATTTCTTCATGTTGATTCATGTTGATTTCTTCATGTTGATGTGCATAAATAGACTGCATTGTGGTGCATGACGCTCCATGCTACACTACACCTGAAAATGAACCATCCCCACGCTCAAAAGACCACGGAAGGAAAAACACGCCATAGTTTTTTCTTAACCTCAATGTGAAACAACACTGAAATAGCGGTTGATTAAATAAATGCTCATGAACAACAATAAGCCATTTTCTTTTGTTGAGAATTATACTAACTAGTACAAACATTATCAGGACTAAGGACACCTTACTGAACGCTTGATATCTATTGGTTAGTTTTCTTAAACcgcctctctctgtttcactatGAGGTCTAGCTACCTGGTACCTAGTAGAAATTATTGTCGTCTGGTTATTTATTGTGCAACGCTTCCTCGTGAGATTATTACAATAACTCTGATATGTACTGCTGCCACCTCGGATTACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTGAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGAATACAGTAACAGTTAACTCTGATATGTACTGCTGCCACCTCAGATTACAGTAACAGTGATTCAAAGGGATTGAAGCTGGATACAGAATCCATAATGCAGATTTAAGGATGACCAGAATTAGGATTTAAAAATTATTAattctaaatgactaaaataatgACTGTGCGGTAACTGTATAACGAGGCATGTTCTCTTATTATTGCAAGTAAACGACTTGATCTACTTCGATACACTGTAAATGCTTTGTAATGACCCGTGCCTCACAGATCCTGTGATTCATACTCATCTATTAAAACCCTGAAACATGGCACACACACCGTTCCCtgatgctctctcctctcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2207150 False 3863 lncRNA 0.42 3 40020748 40025121
TU2207152 True 4203 lncRNA 0.44 4 40020748 40025121

Neighbor

gene id symbol gene type direction distance location
LOC110503199 LOC106613203 coding upstream 211000 39800737 ~ 39809748 (+)
trnat-agu-148 NA coding upstream 256016 39764659 ~ 39764732 (+)
LOC110503201 NA coding upstream 388369 39630663 ~ 39632379 (+)
LOC110503405 NA coding upstream 391537 39396023 ~ 39629211 (+)
LOC110516717 LOC106581405 coding upstream 670367 39238180 ~ 39350381 (+)
LOC110503406 LOC106581179 coding downstream 418649 40443770 ~ 40535727 (+)
LOC110503211 LOC106613213 coding downstream 785057 40810178 ~ 40837501 (+)
LOC110503202 LOC106613212 coding downstream 937321 40962442 ~ 40972379 (+)
si LOC106613210 coding downstream 987557 41012678 ~ 41125378 (+)
LOC118944044 NA coding downstream 1241646 41266767 ~ 41267279 (+)
G1929844 LOC106613240 non-coding upstream 41779 39975541 ~ 39978969 (+)
G1929861 NA non-coding upstream 69801 39950687 ~ 39950947 (+)
G1929859 NA non-coding upstream 71817 39948527 ~ 39948931 (+)
G1929858 NA non-coding upstream 72828 39947691 ~ 39947920 (+)
G1929857 NA non-coding upstream 73805 39946730 ~ 39946943 (+)
G1929891 NA non-coding downstream 814 40025935 ~ 40028517 (+)
G1929901 NA non-coding downstream 24243 40049364 ~ 40082173 (+)
G1929903 NA non-coding downstream 25257 40050378 ~ 40095790 (+)
G1929904 NA non-coding downstream 25287 40050408 ~ 40054817 (+)
G1929912 NA non-coding downstream 59148 40084269 ~ 40085407 (+)
G1929816 NA other upstream 131593 39888327 ~ 39889155 (+)
G1929808 NA other upstream 143473 39874278 ~ 39877275 (+)
G1929664 NA other upstream 470968 39547812 ~ 39549780 (+)
spred3 spred3 other upstream 972055 39020800 ~ 39049676 (+)
bicra LOC106613370 other upstream 1088199 38845482 ~ 38932575 (+)
G1929909 NA other downstream 51355 40076476 ~ 40078332 (+)
G1929916 NA other downstream 64279 40089400 ~ 40105532 (+)
G1931869 NA other downstream 536091 40561212 ~ 40561906 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G371555 NA non-coding CI01000169 null 473647 ~ 473907 (-)
rainbow trout (Oncorhynchus mykiss) G107805 NA non-coding NC_048566.1 CM023220.2 4455510 ~ 4456381 (-)
eurasian perch (Perca fluviatilis) G90948 NA non-coding NC_053119.1 CM020916.1 39425296 ~ 39426186 (+)
striped catfish (Pangasianodon hypophthalmus) G103436 NA non-coding NC_047600.1 CM018546.1 22928169 ~ 22936046 (-)
mexican tetra (Astyanax mexicanus) G308187 NA non-coding NW_019172850.1 APWO02000117.1 792844 ~ 923218 (+)