G1932978


Basic Information

Item Value
gene id G1932978
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41753406 ~ 41753614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2211110
gagagagagatctgaaAGTAAAACATTTACAATTGACATTTTAGTCGTTCAGCAGATGCTCGTATCCAGAGTGCATTCAGCCAggccgcagttgtaaatgacaacttgttctcaactggcctacctggtaaaataaaaggtgaaaaaaaaaatatatctattAATTAAGATAGCTAGTTGAGACAACCATGTACCACAGTCAATTATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2211110 True 209 lncRNA 0.37 1 41753406 41753614

Neighbor

gene id symbol gene type direction distance location
LOC118944044 NA coding upstream 486127 41266767 ~ 41267279 (+)
si LOC106613210 coding upstream 628028 41012678 ~ 41125378 (+)
LOC110503202 LOC106613212 coding upstream 781027 40962442 ~ 40972379 (+)
LOC110503211 LOC106613213 coding upstream 915905 40810178 ~ 40837501 (+)
LOC110503406 LOC106581179 coding upstream 1217679 40443770 ~ 40535727 (+)
LOC110512028 neus coding downstream 269868 42023482 ~ 42078730 (+)
LOC110503413 LOC106613251 coding downstream 386455 42140069 ~ 42335470 (+)
prdm10 prdm10 coding downstream 969917 42723531 ~ 42785160 (+)
cdon LOC106613390 coding downstream 1312673 43066287 ~ 43212712 (+)
bcl9l LOC106613392 coding downstream 1545914 43299528 ~ 43420475 (+)
G1932968 NA non-coding upstream 6400 41746658 ~ 41747006 (+)
G1932965 NA non-coding upstream 8939 41742841 ~ 41744467 (+)
G1932963 NA non-coding upstream 11053 41742097 ~ 41742353 (+)
G1932961 NA non-coding upstream 11599 41741514 ~ 41741807 (+)
G1932959 NA non-coding upstream 13468 41739624 ~ 41739938 (+)
G1932987 NA non-coding downstream 19337 41772951 ~ 41773155 (+)
G1932991 NA non-coding downstream 26732 41780346 ~ 41995714 (+)
G1932993 NA non-coding downstream 32983 41786597 ~ 41786902 (+)
G1933021 NA non-coding downstream 89117 41842731 ~ 41843153 (+)
G1933066 NA non-coding downstream 175781 41929395 ~ 41929769 (+)
G1932564 NA other upstream 415218 41330050 ~ 41338188 (+)
G1932319 NA other upstream 635994 41114637 ~ 41117412 (+)
G1931869 NA other upstream 1191500 40561212 ~ 40561906 (+)
G1929916 NA other upstream 1647874 40089400 ~ 40105532 (+)
G1929909 NA other upstream 1675074 40076476 ~ 40078332 (+)
G1933231 LOC106581444 other downstream 607642 42361256 ~ 42365260 (+)
G1933255 NA other downstream 635813 42389427 ~ 42390261 (+)
G1933563 st14 other downstream 741966 42495580 ~ 42500990 (+)
G1933574 NA other downstream 778104 42531718 ~ 42534983 (+)

Expression


Co-expression Network