G1933067


Basic Information

Item Value
gene id G1933067
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41980013 ~ 41984881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2211235
TGTTAAATATACAACTTGAaccatcatcataatcatcatcatgtcTCATTGTTCAAGTTAGAATGTGAAAAAAGCAGAAGTGCCTGTATTTACACCTGGCTTAAAGGACAACTCCACCCAAAAAacatattttggtatttgtttcattagtccattgttgacatagcaacagcaatcaagttttcaagatatgtaactttcaaaatacagaaaccATCCCCCGTATGAACCATTTAGCATCCGTTAAGGAATGACTCCATGGCCACGTTAAGGCCTCGTCTTTTGGCTTCCACATGGACAAAGTGAGAGCAAGTAAAATAAATGAGAGGATCTTTAACatgagatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgagatgctctgtggcgatagcatgacatgagatgctctgtggcgatagcatgacatgagatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgagatgctctgtggcgatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgagatgctctgtggcgatagcatgacatgagatgctctgtggcgatagcatgacatgagatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgagatgctctgtggcgatagcatgacatgagatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtg
>TU2211236
TGTTAAATATACAACTTGAaccatcatcataatcatcatcatgtcTCATTGTTCAAGTTAGAATGTGAAAAAAGCAGAAGTGCCTGTATTTACACCTGGCTTAAAGGACAACTCCACCCAAAAAacatattttggtatttgtttcattagtccattgttgacatagcaacagcaatcaagttttcaagatatgtaactttcaaaatacagaaaccATCCCCCGTATGAACCATTTAGCATCCGTTAAGGAATGACTCCATGGCCACGTTAAGGCCTCGTCTTTTGGCTTCCACATGGACAAAGTGAGAGCAAGTAAAATAAATGAGAGGATCTTTAACATAAgatgctctgtggagatagcatggcatgacatgctctgtggagatagcatgacatgagatactctgtggtgatagcatga
>TU2211237
TGTTAAATATACAACTTGAaccatcatcataatcatcatcatgtcTCATTGTTCAAGTTAGAATGTGAAAAAAGCAGAAGTGCCTGTATTTACACCTGGCTTAAAGGACAACTCCACCCAAAAAacatattttggtatttgtttcattagtccattgttgacatagcaacagcaatcaagttttcaagatatgtaactttcaaaatacagaaaccATCCCCCGTATGAACCATTTAGCATCCGTTAAGGAATGACTCCATGGCCACGTTAAGGCCTCGTCTTTTGGCTTCCACATGGACAAAGTGAGAGCAAGTAAAATAAATGAGAGGATCTTTAACATAAgatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgagatgctctgtggcgatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgagatgctctgtggcgatagcatgacatgagatgctctgtggcgatagcatgacatgagatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgagatgctctgtggcgatagcatgacatgagatgctctgtggagatagcatgacatgagatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtggagatagcatgacatgacatgctctgtg

Function

NR:

description
PREDICTED: actin cytoskeleton-regulatory complex protein pan1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2211235 False 936 lncRNA 0.44 3 41980013 41983713
TU2211236 False 421 lncRNA 0.38 2 41980013 41984881
TU2211237 True 969 lncRNA 0.43 3 41980013 41983713

Neighbor

gene id symbol gene type direction distance location
LOC118944044 NA coding upstream 712734 41266767 ~ 41267279 (+)
si LOC106613210 coding upstream 854635 41012678 ~ 41125378 (+)
LOC110503202 LOC106613212 coding upstream 1007634 40962442 ~ 40972379 (+)
LOC110503211 LOC106613213 coding upstream 1142512 40810178 ~ 40837501 (+)
LOC110503406 LOC106581179 coding upstream 1444286 40443770 ~ 40535727 (+)
LOC110512028 neus coding downstream 38601 42023482 ~ 42078730 (+)
LOC110503413 LOC106613251 coding downstream 155188 42140069 ~ 42335470 (+)
prdm10 prdm10 coding downstream 738650 42723531 ~ 42785160 (+)
cdon LOC106613390 coding downstream 1081406 43066287 ~ 43212712 (+)
bcl9l LOC106613392 coding downstream 1314647 43299528 ~ 43420475 (+)
G1933066 NA non-coding upstream 50244 41929395 ~ 41929769 (+)
G1933021 NA non-coding upstream 136860 41842731 ~ 41843153 (+)
G1932993 NA non-coding upstream 193111 41786597 ~ 41786902 (+)
G1932987 NA non-coding upstream 206858 41772951 ~ 41773155 (+)
G1932978 NA non-coding upstream 226399 41753406 ~ 41753614 (+)
G1933093 NA non-coding downstream 5637 41990518 ~ 41991989 (+)
G1933096 NA non-coding downstream 12207 41997088 ~ 41997969 (+)
G1933086 NA non-coding downstream 14160 41999041 ~ 42000182 (+)
G1933101 NA non-coding downstream 21830 42006711 ~ 42008221 (+)
G1933127 NA non-coding downstream 77745 42062626 ~ 42063402 (+)
G1932564 NA other upstream 641825 41330050 ~ 41338188 (+)
G1932319 NA other upstream 862601 41114637 ~ 41117412 (+)
G1931869 NA other upstream 1418107 40561212 ~ 40561906 (+)
G1929916 NA other upstream 1874481 40089400 ~ 40105532 (+)
G1929909 NA other upstream 1901681 40076476 ~ 40078332 (+)
G1933231 LOC106581444 other downstream 376375 42361256 ~ 42365260 (+)
G1933255 NA other downstream 404546 42389427 ~ 42390261 (+)
G1933563 st14 other downstream 510699 42495580 ~ 42500990 (+)
G1933574 NA other downstream 546837 42531718 ~ 42534983 (+)

Expression


Co-expression Network