G1933231 (LOC106581444)


Basic Information

Item Value
gene id G1933231
gene name LOC106581444
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 42361256 ~ 42365260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2211428
AACAACTATGGTAAGGTAACCTCACAGGGTTTAAATAAACAAGTATGGTAAGGTAACCTCACAGGGTTTAAATGAACAAGTATGGTAAGGTAACCTCACAGGGTTTAAATGAACAAGTATGGTAAGGTAACCTCACAGGGTTTAAATGAACAACCATGGTAAGGTAACCTCACAGGGTTTAAATGAACAACCATGGTAAGGTAACCTCACAGGGTTTAAATGAACAACCATGGTAAGGTAAACTCACAGGGTTTAAATGAACAACCATGGTAAGGTAAACTCACAGGGTTTGGATCCAGGAGAGAAGCCCCCCAGGTTGGACAGAGCTGGGGTCCCATCGGGGTTCAACCCTTTAGCCTTCAGCTTGGCCTCCTGCAGAgacatcttcctcctctccacttcctTCTCCAGGTGGTCATAGTCCGgCTTCTTCCTGGTGTACAGTTTGAGGGTGGTGATACAGATATCCTTGATCTCTTCCTCCGTGGCTCCAAACAGCAGATACCAGTGAGGTCTGGATGGGAGAGGCAtctGAGAGCTCTGGCAGCCAGGTAGATGCAGGCACATGCGATGGTTTCAGCTTGGAATCTCACAAACACGTTGGTCCTAAGGCTGTCATTCATGTAGTTCCTACAAGGACACAAGCAACATACAGATACATAGCACCATCTCCTCCCATAGCCttgtgtccctcccccaacagacCAGATCACAGAAACACTGGTCTGGGCAGTCACCAGCTGGTCCTCAACAGCTAAAGGATGTGCAGGCTTGTTCCACGTTGACCGTGTTACTTCAACCATGTGTTAGTGCAGGGGtgaaacaaaagcctgcacagtGCAGCTCTACAGGACCAGAGTTGGTGACCACTCAAATAAAGACAGTTATACATCTGAAATAAtaataaacacaaacagtatggaGACTCTAGTTtagctttgtctctctctctctctctctctctcatccatgtTGGTGTTGGGCTGGACATGCAGCGTCACAGATGAAAGCTTGTACACAGGACAGGACGATTATCCAAGAGCCCACTGGTCTATACCGTCTAAAGACAATACGGCACCAAAAACAAAAAGTACACAAGTCCTATTCAGAGGTGGACATGCGTCCTACCATTCTCAGAGGACATGCCTGTCTAAAAGTATGCATGCAAACAGCAAGGGAATGCAGAGCAGACCGAGGTGACCAGAGACATACAGCAGCCCGTTTACAATATGCAGCCATCGGCCAGATAGGTAATGACTTATCCCTTGGCAGAGAGGAGATGGGACCGCAGATCAAGGATCCGATTGGACAGGTCAGACATGATGCACTCGGCAGTTAAAGAGTCGCTAGGCAACCCTGAACTCCACATCAAAGGGCCAACACAAAGCTGCCATGTGTAGAACAGTGACGCGACGGTTGATGGAAGCCATCAGGGTTCAAGGTGTTTTAAAGTGGGATTCTAATTGTAGCTAGTGGTCTTGAGTTTCAGTGACCCTGATAAGCTATAGCTCAGGCATGGCAACATCTGACAGACAACAGACATTTCAGACGGATGGTTTTGTCGCCTAGCAAGCAGTCAGACAGAAACAGGAAAATGAGGGGGTGACGGAACAGAAGACTGTTGGTGAAATCCTTTCCCACCCTATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2211428 True 1647 TUCP 0.47 5 42361256 42365260

Neighbor

gene id symbol gene type direction distance location
LOC110503413 LOC106613251 coding upstream 25786 42140069 ~ 42335470 (+)
LOC110512028 neus coding upstream 282526 42023482 ~ 42078730 (+)
LOC118944044 NA coding upstream 1093977 41266767 ~ 41267279 (+)
si LOC106613210 coding upstream 1235878 41012678 ~ 41125378 (+)
LOC110503202 LOC106613212 coding upstream 1388877 40962442 ~ 40972379 (+)
prdm10 prdm10 coding downstream 358271 42723531 ~ 42785160 (+)
cdon LOC106613390 coding downstream 701027 43066287 ~ 43212712 (+)
bcl9l LOC106613392 coding downstream 934268 43299528 ~ 43420475 (+)
ddx6 ddx6 coding downstream 1074753 43440013 ~ 43465245 (+)
treh treh coding downstream 1107464 43472724 ~ 43491902 (+)
G1933234 NA non-coding upstream 3387 42357662 ~ 42357869 (+)
G1933239 NA non-coding upstream 6570 42354426 ~ 42354686 (+)
G1933237 NA non-coding upstream 10622 42350418 ~ 42350634 (+)
G1933202 NA non-coding upstream 12683 42291838 ~ 42348573 (+)
G1933232 LOC106613252 non-coding downstream 4556 42369816 ~ 42370459 (+)
G1933242 NA non-coding downstream 6188 42371448 ~ 42371726 (+)
G1933248 NA non-coding downstream 13867 42379127 ~ 42379403 (+)
G1933252 NA non-coding downstream 21042 42386302 ~ 42386554 (+)
G1933253 NA non-coding downstream 22329 42387589 ~ 42387799 (+)
G1932564 NA other upstream 1023068 41330050 ~ 41338188 (+)
G1932319 NA other upstream 1243844 41114637 ~ 41117412 (+)
G1931869 NA other upstream 1799350 40561212 ~ 40561906 (+)
G1929916 NA other upstream 2255724 40089400 ~ 40105532 (+)
G1933255 NA other downstream 24167 42389427 ~ 42390261 (+)
G1933563 st14 other downstream 130320 42495580 ~ 42500990 (+)
G1933574 NA other downstream 166458 42531718 ~ 42534983 (+)
G1933999 NA other downstream 792843 43158103 ~ 43158566 (+)
G1934201 NA other downstream 1068188 43433448 ~ 43435352 (+)

Expression


Co-expression Network