G1934195


Basic Information

Item Value
gene id G1934195
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43469523 ~ 43471503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2212634
gggattgggagGGGTGTCTCTTggccatgaggggGGGAGGGGGCGGTCATGGCTTTTGGTGTTGTATTTTCTAAACTTTCCCCAGATCAACCTCTGTTCAGGTTGTGTTTAGCTGTTCCATGTTGCTTTGGGGATCCCTGAAAACAAGATGGTGAGAtgctctttctgtttctcttttcCAATGACAAATATTGGATGTCTACAAATGTGTGTCTCTACATGCTGTTGTCAAAAAGAAATTCAAGCTGTACCAAGttgaactacagtgttgggagAATGTACATGCTGTGGTCTTTCTGCTTTCTCATTGGTTGGGACTGTGACCCCTGTTTTCTCTGGTCTATTGTAGACCCAGAATAAAACGCATCTAGCTTTTGGGATGGTTTATATTGGAAAGGGTGGGCCACTGCGGGAAGGGCGTTACACATTTAACGTGACTAGATGAGAGAACAGGGGTCAAACCACAGGCACTTTGGCAGCTGCCTGGTtttatatttactgtatttttCAGCCCCACTGGCAGCTGTAGCCACAGCCCATCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCATCTGTCCTAGTCCCCTAGACCATCTGTCTTAGTCCCCTAGGTCATCTGTCCTAGTCCCCTAGTCCTGGTGCAcaagccatagggctctggtaaaatgtagtgcactacataaataATTGGGGTGCTATTTGGCAAGCAACCTCTGACATGCTCTCATTTTACCATAACTCTACTGTGATTGGTTGTGGCTGTCCCTCCCAGTGGAGTGGGGTTTCTCATCTTGAAGGAGGAGACGAGGAGCatcttgcttttttttttttttttttaaagattaatTTCAATTGGATATATGATACACCAGGAAATGGTCTCctccttcaagggtttttattttggggtgggAGGGTTACTACAAGCTGCCCTGATGCATCGGTAACACCTCCCTTGATGTGACGCCACGTCCCCCTCCAGAATCaacccctaaccgtacccccCTCGGCGCTAGCCTGGTTGGCAGTCTGTTCCTGCCCATTCCAACTCCTTACGGAGTTGAGGTTTTGGAGTGATGAGTAGGGCCAGGGCAGAAACAGCTCTTGGACCAGGCTCTCCTCTACCCTTGTGCAGGTCTGACAGAACAGGTGTAAGTGAAGCTCTGTAGCTGTTTGGGGGTGGAGCTTCACGTTAAATCTACATGGTTCTGTCAAGATGTACAACTAGGAGGAAGCCAGGGATTGGTTCTGGACAGGGTTGTACACTATTGTTGGGAAATGTTGTCTTGTAAGATCACTAGCATGtcagggagggttggagaggagacCTTATCAagtcttaaatggcaccctattccctatatagtgcactactttagaccagaggtcTATGTTagtagtgcgctatgtagggaGTAGGATTCCATTTGGATGCCGTGGCGGATCCCTCTGACTAGATGTGTCAGTTTTATTTCAGGGTGGGATGGATGtgtcccggggggggggggggtcttatgTTAGGATATTTAAACAATCAGAATATCCACAAGCAAGGTTCTGGGTAGACAACTTGTTCCCTTAAATTTTGGCCATTTTTATTTTGTAACTCGATGTCAGTTGGATTAGAAGTTTGTTAAATTCAAAACTAAATTCAAGTGAAAGAAAGCATTTAATTTTTTGGAATTGGCTGTTTCTCAGTGGAGCTGTGTTTAAATGATAAATAAATGTCTTCTGTGTTGTGGACATGTCCTGATGGTTCATATCAGAAATGACActtttggttaaaaaaaataaagctCACTGAAATCC
>TU2212633
GGGGGATTGGGAGGGGGCGGTCATGGCTTTTGGTGTTGTATTTTCTAAACTTTCCCCAGATCAACCTCTGTTCAGGTTGTGTTTAGCTGTTCCATGTTGCTTTGGGGATCCCTGAAAACAAGATGGTGAGAtgctctttctgtttctcttttcCAATGACAAATATTGGATGTCTACAAATGTGTGTCTCTACATGCTGTTGTCAAAAAGAAATTCAAGCTGTACCAAGttgaactacagtgttgggagAATGTACATGCTGTGGTCTTTCTGCTTTCTCATTGGTTGGGACTGTGACCCCTGTTTTCTCTGGTCTATTGTAGACCCAGAATAAAACGCATCTAGCTTTTGGGATGGTTTATATTGGAAAGGGTGGGCCACTGCGGGAAGGGCGTTACACATTTAACGTGACTAGATGAGAGAACAGGGGTCAAACCACAGGCACTTTGGCAGCTGCCTGGTtttatatttactgtatttttCAGCCCCACTGGCAGCTGTAGCCACAGCCCATCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCCCTAGTCCATCTGTCCTAGTCCATCTGTCCTAGTCCCCTAGACCATCTGTCTTAGTCCCCTAGTCCTGGTGCAcaagccatagggctctggtaaaatgtagtgcactacataaataATTGGGGTGCTATTTGGCAAGCAACCTCTGACATGCTCTCATTTTACCATAACTCTACTGTGATTGGTTGTGGCTGTCCCTCCCAGTGGAGTGGGGTTTCTCATCTTGAAGGAGGAGACGAGGAGCatcttgcttttttttttttttttttaaagattaatTTCAATTGGATATATGATACACCAGGAAATGGTCTCctccttcaagggtttttattttggggtgggAGGGTTACTACAAGCTGCCCTGATGCATCGGTAACACCTCCCTTGATGTGACGCCACGTCCCCCTCCAGAATCaacccctaaccgtacccccCTCGGCGCTAGCCTGGTTGGCAGTCTGTTCCTGCCCATTCCAACTCCTTACGGAGTTGAGGTTTTGGAGTGATGAGTAGGGCCAGGGCAGAAACAGCTCTTGGACCAGGCTCTCCTCTACCCTTGTGCAGGTCTGACAGAACAGGTGTAAGTGAAGCTCTGTAGCTGTTTGGGGGTGGAGCTTCACGTTAAATCTACATGGTTCTGTCAAGATGTACAACTAGGAGGAAGCCAGGGATTGGTTCTGGACAGGGTTGTACACTATTGTTGGGAAATGTTGTCTTGTAAGATCACTAGCATGtcagggagggttggagaggagacCTTATCAagtcttaaatggcaccctattccctatatagtgcactactttagaccagaggtcTATGTTagtagtgcgctatgtagggaGTAGGATTCCATTTGGATGCCGTGGCGGATCCCTCTGACTAGATGTGTCAGTTTTATTTCAGGGTGGGATGGATGtgtcccggggggggggggggtcttatgTTAGGATATTTAAACAATCAGAATATCCACAAGCAAGGTTCTGGGTAGACAACTTGTTCCCTTAAATTTTGGCCATTTTTATTTTGTAACTCGATGTCAGTTGGATTAGAAGTTTGTTAAATTCAAAACTAAATTCAAGTGAAAGAAAGCATTTAATTTTTTGGAATTGGCTGTTTCTCAGTGGAGCTGTGTTTAAATGATAAATAAATGTCTTCTGTGTTGTGGACATGTCCTGATGGTTCATATCAGAAATGACActtttggttaaaaaaaataaagctCACTGAAATCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2212634 False 1935 lncRNA 0.46 2 43469523 43471503
TU2212633 True 1887 lncRNA 0.46 2 43469595 43471503

Neighbor

gene id symbol gene type direction distance location
ddx6 ddx6 coding upstream 4278 43440013 ~ 43465245 (+)
bcl9l LOC106613392 coding upstream 49048 43299528 ~ 43420475 (+)
cdon LOC106613390 coding upstream 256811 43066287 ~ 43212712 (+)
prdm10 prdm10 coding upstream 684363 42723531 ~ 42785160 (+)
LOC110503413 LOC106613251 coding upstream 1134053 42140069 ~ 42335470 (+)
treh treh coding downstream 1221 43472724 ~ 43491902 (+)
G1934198 NA non-coding upstream 1370 43418644 ~ 43468153 (+)
G1934215 NA non-coding upstream 11809 43453672 ~ 43457714 (+)
G1934210 NA non-coding upstream 24418 43443281 ~ 43445105 (+)
G1934203 NA non-coding upstream 39004 43423780 ~ 43430519 (+)
G1934192 NA non-coding upstream 60213 43409043 ~ 43409310 (+)
G1934242 NA non-coding downstream 105172 43576675 ~ 43579791 (+)
G1934245 NA non-coding downstream 115238 43586741 ~ 43587197 (+)
G1934400 NA non-coding downstream 143525 43615028 ~ 43615230 (+)
G1934407 NA non-coding downstream 168706 43640209 ~ 43642077 (+)
G1934413 NA non-coding downstream 189575 43661078 ~ 43662273 (+)
G1934201 NA other upstream 34171 43433448 ~ 43435352 (+)
G1933999 NA other upstream 310957 43158103 ~ 43158566 (+)
G1933574 NA other upstream 934540 42531718 ~ 42534983 (+)
G1933563 st14 other upstream 968533 42495580 ~ 42500990 (+)
G1933255 NA other upstream 1079262 42389427 ~ 42390261 (+)
G1935694 NA other downstream 1628799 45100302 ~ 45103958 (+)
G1935696 NA other downstream 1632629 45104132 ~ 45104500 (+)
G1935897 NA other downstream 1817007 45288510 ~ 45289135 (+)
G1936028 NA other downstream 2013840 45485343 ~ 45492999 (+)
G1936029 NA other downstream 2014233 45485736 ~ 45487871 (+)

Expression


Co-expression Network