G1934448


Basic Information

Item Value
gene id G1934448
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43676444 ~ 43677127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2212996
cctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagatggacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacagacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacagacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacggacccactggttgtcctctaggttacagagagctggtagtcccatccacc
>TU2212997
cctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagatggacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacagacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacggacccactggttgtcctctaggttacagagagctggtagtcccatccacc
>TU2212998
cctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagatggacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacagacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacggacccactggttgtcctctaggttacagagagctggtagtcccatccacc

Function

NR:

description
uncharacterized protein LOC110969240 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2212996 False 360 lncRNA 0.56 3 43676444 43677127
TU2212997 False 279 lncRNA 0.56 2 43676444 43677127
TU2212998 True 279 lncRNA 0.56 3 43676444 43677127

Neighbor

gene id symbol gene type direction distance location
treh treh coding upstream 184542 43472724 ~ 43491902 (+)
ddx6 ddx6 coding upstream 211199 43440013 ~ 43465245 (+)
bcl9l LOC106613392 coding upstream 255969 43299528 ~ 43420475 (+)
cdon LOC106613390 coding upstream 463732 43066287 ~ 43212712 (+)
prdm10 prdm10 coding upstream 891284 42723531 ~ 42785160 (+)
G1934437 NA non-coding upstream 8926 43667301 ~ 43667518 (+)
G1934413 NA non-coding upstream 14171 43661078 ~ 43662273 (+)
G1934407 NA non-coding upstream 34367 43640209 ~ 43642077 (+)
G1934400 NA non-coding upstream 61214 43615028 ~ 43615230 (+)
G1934245 NA non-coding upstream 89247 43586741 ~ 43587197 (+)
G1934463 NA non-coding downstream 20652 43697779 ~ 43698417 (+)
G1934519 NA non-coding downstream 53093 43730220 ~ 43730438 (+)
G1934521 NA non-coding downstream 54054 43731181 ~ 43731418 (+)
G1934551 NA non-coding downstream 116076 43793203 ~ 43795482 (+)
G1934612 NA non-coding downstream 150462 43827589 ~ 43828335 (+)
G1934201 NA other upstream 241092 43433448 ~ 43435352 (+)
G1933999 NA other upstream 517878 43158103 ~ 43158566 (+)
G1933574 NA other upstream 1141461 42531718 ~ 42534983 (+)
G1933563 st14 other upstream 1175454 42495580 ~ 42500990 (+)
G1933255 NA other upstream 1286183 42389427 ~ 42390261 (+)
G1935694 NA other downstream 1423175 45100302 ~ 45103958 (+)
G1935696 NA other downstream 1427005 45104132 ~ 45104500 (+)
G1935897 NA other downstream 1611383 45288510 ~ 45289135 (+)
G1936028 NA other downstream 1808216 45485343 ~ 45492999 (+)
G1936029 NA other downstream 1808609 45485736 ~ 45487871 (+)

Expression


Co-expression Network