Gene
RNA
| Item | Value |
|---|---|
| gene id | G1936160 |
| gene name | cntn5 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 45593918 ~ 45594415 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cntn5 | Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be active in neuron projection. Orthologous to human CNTN5 (contactin 5). |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2215106 | True | 498 | lncRNA | 0.45 | 1 | 45593918 | 45594415 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| treh | treh | coding | upstream | 2102016 | 43472724 ~ 43491902 (+) |
| ddx6 | ddx6 | coding | upstream | 2128673 | 43440013 ~ 43465245 (+) |
| bcl9l | LOC106613392 | coding | upstream | 2173443 | 43299528 ~ 43420475 (+) |
| cdon | LOC106613390 | coding | upstream | 2381206 | 43066287 ~ 43212712 (+) |
| prdm10 | prdm10 | coding | upstream | 2808758 | 42723531 ~ 42785160 (+) |
| G1936145 | NA | non-coding | upstream | 8987 | 45569372 ~ 45584931 (+) |
| G1936135 | NA | non-coding | upstream | 36354 | 45557255 ~ 45557564 (+) |
| G1936127 | NA | non-coding | upstream | 43859 | 45549803 ~ 45550059 (+) |
| G1936098 | NA | non-coding | upstream | 70964 | 45522664 ~ 45522954 (+) |
| G1936090 | NA | non-coding | upstream | 76697 | 45517013 ~ 45517221 (+) |
| G1936161 | NA | non-coding | downstream | 255 | 45594670 ~ 45595093 (+) |
| G1936162 | NA | non-coding | downstream | 707 | 45595122 ~ 45595339 (+) |
| G1936164 | NA | non-coding | downstream | 2161 | 45596576 ~ 45596783 (+) |
| G1936167 | NA | non-coding | downstream | 12459 | 45606874 ~ 45607105 (+) |
| G1936202 | NA | non-coding | downstream | 69923 | 45664338 ~ 45690334 (+) |
| G1936028 | NA | other | upstream | 105043 | 45485343 ~ 45492999 (+) |
| G1936029 | NA | other | upstream | 106047 | 45485736 ~ 45487871 (+) |
| G1935897 | NA | other | upstream | 304783 | 45288510 ~ 45289135 (+) |
| G1935696 | NA | other | upstream | 489418 | 45104132 ~ 45104500 (+) |
| G1935694 | NA | other | upstream | 489960 | 45100302 ~ 45103958 (+) |
| G1936247 | NA | other | downstream | 171435 | 45765850 ~ 45767859 (+) |
| G1936286 | NA | other | downstream | 250289 | 45844704 ~ 45846538 (+) |
