XLOC_038612 (NCAM2)


Basic Information

Item Value
gene id XLOC_038612
gene name NCAM2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NW_003336612.1
NCBI id KN150432.1
chromosome length 91010
location 6941 ~ 79629 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00076056
ATGAGTGTTGGAGAGTCCAAATTCTTCACCTGCACAGCCATCGGTGAGCCGGTTAGCATAAACTGGTTCAGTCCTCAAGGCGAGCGGATCATCTCAAACGAGCGAGTGATTGTTCATACCGAGGGCGTTCGGTCCAGGCTAACCATCTATAACGCCATCATAGAGGATGCTGGGATATACCGATGCCAGGCTGCGGATGCTAAAGGACAGAGTCAAGAAGCCACAGTGGTGCTGGAGATTTACCAGAAGCTGACGTTCCGCGAGGTCAAGACGCCGCAGGAGTTTCGTCAGGGTGACGATGCTGAAGtggtgtgtgacgtcatcagCTCTCCTGTCCCGGCCGTATCCTGGTTCTACAAGAACAGGGAAATCACATCTGAGCCCAACAgcAGATTTCAGGTTCTTCCCACCAATAACCTGCAGATCCTGAAAGTGGGTAAAGCGGATGAGGGAGCGTATCGCTGTGAGGCGCGCGTGGAGGCTCGAGGAGAAATCGACTTCAGGGATATTGTGGTGCAGGTGAACGTTCCTCCTGTGCTGTCTGTGCCGCAGCAGTCCTTCAACGCCACTGCAGACTACCAGGAGTCCGTCACTTTCACCTGCGTCACTTCTGGCTCGCCCGACCCGCAGGTCACCTGGTACTGGAAGGGTCATGCGATCGAGCACTCGGAGCAGTACGTGTTGAACACTATGAATGGAGGTAAAAGCACGCTCACTGTTAAAAACATCAAGCAAACAGACGGTGGACCCTACATGTGTCGAGCCAGCAACAAAGCCGGCAGCTCCGAGAGCCAGCTCTTCCTCAAGGTGTTCGTCCAGCCTCACATCACTCAGCTGAGGAACGTGACCGCAGTGGAGGGCAGCGCAGCCATGATCTCCTGTACAGCTGAAGGAGAGCCGCTGCCCGAGATCTCCTGGAGGAGAGCCAGCGACGGACACAGCTTCACAGACGGGGAGAAGAGTAAGGATGGGCGTGTGGAAGTGCGTGGACGCCATGGAAAGTCCATGTTGACCATCAGCGGGGTTCAGCTCTCAGACTGGGGCCGATTCGACTGTGAAGCTCTCAGCAGGATTGGAGGCCATCAGAAGAGCATGTTCTTGGACATCGAGTATGCTCCAAAGTTCCAGACAAATCAAAGCATTTTCTACTCGTGGGAGGGAAACCCGGTGAACATCAGCTGTGAGGTGAAGTCTAATCCTGCGGCGACGATGCTGTGGAGACGAGAGCGCTTCACCATCTCCAGCCAAGGCACCAGCAACATCCGCATCCACAGCACAGACGGACGCTCACTGCTGGAGGTCACTCCAGTGTCCGACAGGGATTTTGGACGCTACAACTGCACTGCCAGAAACAACATCGGCGCTCGATACCAAGAGTTTATACTAGCacaggcagcagctccacgttcacaacttcatgcattggACACAGCTACATTACAAGACGTTGGCACCCTAGGttttattaaagtggaatccaatgtTGGGttccctgcatcatttcactttattaatcataacGAGACTTCAGCCAGACAGAATGAACGAAGCTGTcgctcacacGGTGTTcaagCTGCAGTGGTTCTGACCAGTCTGGAGCCCAACACCACGTATGAGGTGCGAGTGTCTGCGGTCAATGGAAAGGGTCAGGGGGAATTCAGCCACACAGAAAGCTTCCAGACGCTGCCCATCCGTGAGCCCAGTCCACCAACGGTGCACGGTCAGAGAGGCGTGGGGAAGGCCTACAGACTGGGCCTGGTAAAGCAGGATGACGGAGGGATGCCCATCGTCGAGTACATCCTCAAGTATAAAACCgataaAGAGGAGCAGTGGATGACCAAGCTGGTTCCGGGTATGAATGATTTTGCGCTCCTGCAGCCGCTTCAGTGGAACACCAGATATAATGTGGAGATCACAGCGCGCAACGTCAAGGGTCTGACAGAGCCCACGTACTTCCAGTTCCTCATGCCGCAGAAGCCTGATatcacagCAGACTCTCTGTTCAGTGGGCTGGGTGTGGGCGCTGTGCTAGGTGTGGGTGTGTGCGTTCTCCTCCTCCTGCTGGTGCTGCTGGACGTCAGCTGCTTCTTCCTGCGCCAGTGCGGCCTCCTCATGTGCATCACGCGCAAACTCTGCAGCAAGAAGACCAGCACCAGCGGCAAGAGCAAAGAGCTGGAGGAGGGCAAGGCTGCGTATCTgGTTGATGGCTCAAAGGAGCCCATCGTGAAGATGAGAACAGAAGAAGAGAGAGTTACTAACCCGGAGGACTGCAGTCCAGTGAATGAACCCAATGAGACGACTCCTCTGACCGAGCCCGAGAAGCTGCCGCTGAAGGAGGAAAACGGCAAAGAAGTGCTGAAGCCGGATCTGATCGAGATTAAAGTCCACACGGACAACAGCATCCACACAAAACAGGACGACAGCAAAGCGTAA

Function

symbol description
ncam2 Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in brain; sensory system; and swim bladder. Orthologous to human NCAM2 (neural cell adhesion molecule 2).

GO:

id name namespace
GO:0001666 response to hypoxia biological_process
GO:0007155 cell adhesion biological_process
GO:0043005 neuron projection cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-010822-1 Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in brain; sensory system; and swim bladder. Orthologous to human NCAM2 (neural cell adhesion molecule 2).

Ensembl:

ensembl_id ENSDARG00000098523

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00076056 True 2433 mRNA 0.55 25 6941 79629

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_05254419_05314859 NA coding CI01000299 null 5254419 ~ 5316243 (+)