LOC118944560 (LOC106587999)


Basic Information

Item Value
gene id LOC118944560
gene name LOC106587999
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 9043417 ~ 9073342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964555.1
ATGGTGAGACAACAACCTCCACTGCAGGCGGCCAACGCCACGGCACCCCAGGAGAAGACCAAGAGCCCGGTCCCAGTCCGCGGTGGAGGTGGTGGGGCAGGGAAGGGCAAGGCCAGGGTCAAGAAGGGCAAAGGAGGCAAGGCCAAACCTGAACCTCCGGAAGAGACGGACCCCAGGAAGCTGGAGCTACGCAACTGGGTGAACTCTCTGGAGCAGGCCATGATGGATGCCCTGGTGCTGGACAGGGTGGACTTCGTCAAGCTGCTGATAGAGAACGGTGTCAACATCCACCACTTCCTCACCATCCCTCGTCTGGAGGAACTCTACAACACgGGAAATCTTCCACCGGATTACCAGATCACCTTGATCGATATCGGATTGGTCCTGGAGTTCCTGATGGGCGGGGCTTATCGCTGTAACTACACCAGGAAACAGTTCCGCACCCTCTACAACAACCTCTACGGTTTAAAAAGAGACGACGAGCCTGGAGGAACAGGCAAGAGTaaagggaagaagaagaagaagaagaaagaggaagagatcgACATCGATGTGGACGACCCGGAGGTCAGCCGCTTCCAGTACCCGTTCCATGAGCTGATGGTGTGGGCCGTTCTCATGAAGCGTCAGaagatggctctgttcctgtggaagaggggggaagaggccATGGCCAAAGCTCTGGTGGCCTGTAAGCTGTACAAGGCCATGGCCCACGAGTCGTCTCAGAGTGAACTGGTGGACGACATCTTCCAGGACCTGGAAAACAATTCCAAAGAGTTTGGCCAGCTGGCCTACGAGCTCCTAGACCAGTCCTATAAGCACGATGAGCAGGTGGCCATGAAACTACTGACCTATCAGCTAAAGAACTGGAGCAACTCTACCTGCCTGAAACTGGCTGTAGCGGCCAAGCACAGAGACTTTATCGCCCACACCTGCAGTCAGATGCTGCTCACTGATATGTGGATGGGATGTCTGAGAATGGGCAAGAGGAACGGGTTCAAGGTGATATTTGGCATAATTTTCCCACCTTCGATTCTCCTCATGGATTTTCGACTCGGGGAGGAAGTGACATGTCAAGCCCCAGCGGAGAACGAAGAAGCGAAGGACAAAGACGACGACAATAAATCCAGCAAGATCTCCTACCTGGCCTACCTGTGTTTGTACAACTACATCATCCTGGTCAAGATGGAACGCTGGCCGTCCCTGCAGGAGTGGATCGTCATCTCTTACATCATCACTCTGGGAATGGAGAAAGTCAGACAGATCCTGATGTCAGAGCCGGGCAAGCTGAAGCAGAAGATCAATGTTTGGGCCGAAGAGTACTGGAACATCACAGACGCGGCGGCCATCTTTACCTTCCTCCTGGGCCTGATGCTGAGGCTGCAGAGCGAGCCCCTGTTGGGCATCGGACGGGTCATCTACTGCGTGGACATCATCTTCTGGTACATCAGGGTGCTCGACATCTTCGGGGTCAACAAGTACCTGGGACCCTACGTCATGATGATCGGGAAAATGATGATTGACATGTTGTACTTCGTGGTGATCATGCTGGTGGTGTTGATGAGTTTCGGCGTGGCGCGGCAGGCCATCCTGCACCCTGATGAGATCCCAACATGGCGTCTGGCCAGGAACATCTTCTACATGCCTTACTGGATGATCTATGGGGAAGTGTTCGCTGACTCCATAGACCGTAAGAGTAGCATTAATAGTAAGATTCTGTTTCCTGTTTCATGGGTGGATGATCAATTCAATCCTAATCCCAtgatggttgtgatggtggtgtgtTGTCGTAGTCTCAATCCCAGAGGAACAAACCTTGTGTTCTGGTCCTAATCTCTGTAGTCTCATTCCCAGTGGAACAAACCTGGTGTTCTGGTCCTAATCTCTGTAGTCTCATTCCCAGTGGAACAAACCTGGTGTTCTGGTCCTAATCTCTGTAGTCTCATTCCCAGTGGAACAAACCTGGTGTTCTGGTCCTAATCTCTGTAGTCTCATTCCCAGTGGAACAAACCTGGTGTTCTGGTCCTAATCTCTGTAGTCTCATTCCCAGTGGAACAAACCTGGTGTTCTGGTCCTAATCTCTGTAGTCTCATTCCCAGTGGAACAAACCTGGTGTTCTGGTCCTTATCTCTGTAGTCTCATTCCCAGTGGAACAAACCTGGTGTTCTGGTCCTAATCTCTGTAGTCTCATTCCCAGAGGAACAAACCTGGTGT

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily M member 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964555.1 True 2217 mRNA 0.52 10 9043417 9073342

Neighbor

gene id symbol gene type direction distance location
LOC110500985 LOC106595573 coding downstream 7031 9025778 ~ 9036386 (-)
LOC110499813 LOC106609698 coding downstream 83702 8907931 ~ 8959715 (-)
LOC118936605 LOC106609696 coding downstream 173367 8826207 ~ 8870050 (-)
LOC118944550 NA coding downstream 259811 8781659 ~ 8783606 (-)
LOC118944553 NA coding downstream 464916 8575215 ~ 8578501 (-)
LOC110516734 LOC107593117 coding upstream 16824 9090166 ~ 9108249 (-)
otud7a LOC106591491 coding upstream 185634 9258976 ~ 9384991 (-)
gtf2a2 gtf2a2 coding upstream 318619 9391961 ~ 9394414 (-)
LOC110506256 LOC106561895 coding upstream 1047708 10121050 ~ 10126999 (-)
fhl5 LOC106561894 coding upstream 1093767 10167109 ~ 10184060 (-)
G1994620 NA non-coding downstream 20913 9021948 ~ 9022504 (-)
G1994619 NA non-coding downstream 21829 9016118 ~ 9021588 (-)
G1994618 NA non-coding downstream 27325 9014648 ~ 9016092 (-)
G1994616 NA non-coding downstream 31416 9011498 ~ 9012001 (-)
G1994617 NA non-coding downstream 32760 9008495 ~ 9010657 (-)
G1994659 NA non-coding upstream 71207 9144549 ~ 9144871 (-)
G1994660 NA non-coding upstream 74577 9147919 ~ 9148151 (-)
G1994661 NA non-coding upstream 74892 9148234 ~ 9148493 (-)
G1994664 NA non-coding upstream 81165 9154507 ~ 9154712 (-)
G1994665 NA non-coding upstream 82602 9155944 ~ 9156345 (-)
LOC110527031 LOC106587988 other downstream 294673 8564300 ~ 8805872 (-)
LOC118944463 LOC106562776 other downstream 937435 8096974 ~ 8105982 (-)
LOC110515105 LOC106593850 other downstream 1170401 7863456 ~ 7873075 (-)
LOC118944558 LOC106595801 other downstream 1237563 7802643 ~ 7809933 (-)
LOC110526845 LOC106592787 other downstream 1292040 7744309 ~ 7751407 (-)
G1994674 NA other upstream 103696 9177038 ~ 9180705 (-)
G1994786 NA other upstream 374251 9447593 ~ 9448494 (-)
G1994812 NA other upstream 427374 9500716 ~ 9501653 (-)
G1996632 NA other upstream 1848674 10922016 ~ 10924533 (-)

Expression


Co-expression Network