LOC110506256 (LOC106561895)


Basic Information

Item Value
gene id LOC110506256
gene name LOC106561895
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 10121050 ~ 10126999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585689.2
GGCAGCAGACTCTCCAACTTGCTCCTAACCTAAGGATATACAGCAGCAGTAGAAGGACAGTGGTGCTGAAGATTTCTTACCCCTTTTTCTAACTCATACTCATTCATCTGCATGCCGATTTAACCTTAGAAAATGGAAGTACGAGTATTGAGCATCCTCATCCTCCTGGTGGCCTTGACGGCTGTTCATGGTAGTGGTTCatatgtggtgaagaaggtgatGAAGGTTGCCCCTCAATACCAGCCCTACTCTGTGAAGAGTCACGTGGTGTCGGTGGCGGGAGAGCCCGGTGCGCCAGGTGAGCCCGGCCCAGAAGGCCCCCCTGGCCCACCTGGCCCTCCAGGGGAAAGTGCTGTGGGACAGCCTGGACCCGAGGGCCCTGCCGGACCACCCGGACCTGCTGGCTACTCCGCACCTGGCAAGCCTGGTTCCTCAGGTGGGCCTGGTAAGCCTGGTGTTCCTGGCGCAGCTGGCAAGAAAGGAGACGTGGGCACAGCTGGACTTCAAGGACCTAGGGGCATGCCTGGACCTACGGGAAGTTCCGGACCAGCTGGGATCTCTTCCACTGGCAAGCCTGGACCTCATGGTCTGCCCGGAGCAATGGGGCCAAGAGGGGAAACAGGCCTTAAGGGACATCCAGGTATGCCTGGTTTGCCAGGAGCTAAGGGTGATAGAGGAGTGGGTATCCCAGGGGCACAAGGTGAGACAGGGGCTGTGGGACCTATGGGACCATCTGGGCAGCCTGGAGCAGCCGGAGTTGGAAAGCCAGGCAAGCCAGGAATCCCTGGTGAAGCAGGAAAGTCAGGTAGCCCAGGTAGGGATGGGGGCGCTGGTCCCATGGGTTTGCCAGGTGCTAAGGGCCACACAGGGGCTCCTGGTGTTGGTCTGCCTGGAAAACCAGGTGATAATGGGGCTCCAGGTATGCCTGGTGCAGCTGGTCCTAAAGGTCATCAGGGAGCAACGGGAGCAACTGGTGCTCCCGGTATCCCTGGATATGGAAAGCCAGGAGCAAATGGACAGAAGGGTGAGAGGGGAGTTGTAGGAAGCACAGGCACAACAGGTCAGAAGGGTGAGCCAGGAGCACAGGGATATACCGGTGCTACTGGTGCTACTGGGCCCATGGGTCTCACTGGTCCTCAGGGTGCAAGAGGCTTCCAGGGAGATATTGGGGAAATGGGTCCCAAAGGTGACACAGGTGCAATGGGACCCCAGGGACCAAAGGGATATAAGGGAGATCAGGGAGCACAAGGTTTCCAGGGAAAGCAAGGTAATACTGGAGCAACAGGCCCAACTGGTGCCATGGGAGCTACTGGAGCTCCAGGTAACAAAGGTGACACTGGTCACACAGGTTCAACTGGTGCTTCAGGTGTCCCAGGACCTGCCGGGCCCAAAGGTTTCCCAGGGCGCAATGGTGAGGCAGGTGAGGCTGGAGCTGCTGGAGCCTCAGGTCCCAGAGGACCTGTTGGGCCTACTGGTGCCGCAGGTACACCTGGCCTTAAAGGACACCCTGGTCTCCCTGGAGCACCTGGCCCAGCTGGACTGGCCGCTAAGGGAATCCTTGGCCCTCTCGGTCCCCCTGGGCTCCCTGGTGCTGATGGTCAGGATGGTGGCCAAGGCCCTGCTGGCCCTCCCGGCCCACCTGGTCCTCCCGGCGAGTTCTTTCTTGAAAAGAGCATGGGCATGGGTGAGGTCATGGTGCCTACTCTTGTTAAGGCCCCTATGTCtgctttctctgtttctctggctAGGCCTTATCCTCCATCTGGGGAACCTATTAAGTTTGACAATGAGGTGTACAATGCGGAGAATCACTATGACACTACCACTGGGCAGTTCACTTGCCAGGTTCCTGGAGTCTACTACTTCTCATACACCATTCACGTGAATGGGGCTCATGCTCTGGTGGCTCTGTACAAGAACGACAAGCCAGTCATGTTCAGCTATGATGAGTACAACAAGGGCTTCCTGGACCAGATGTCCGGTAGCACTGTCCTTATGCTCGATGTGAACGACACAGTCTACCTTCAGATTCCCGATGATGAGGCCAATGGCGTTTTTGCCGCTGAGAATGTCCACTGCTCTTTCTCTGGGTTCCTTATCGCTTCAACGTGATACGGTGTCACCCAATAACAACACAACTAAATCTGCAAGCTATTTCTCAAACAAGTAAACTCTCTGTCTTTCCCAACCAGGCAGTTGTCTCTTTCTTTGAGTAATAGAAGCATCTCGACTTGAAAAATCCAAGAAATGGGTGCTAAGAAGAAGGAAATAATTTATCTAAGAGGTTATCAGGGATGGGGAGGCAATCAACAAAGTTACCAATGATTCAGAATTGTATTTTTTGTGAGTGGAGGCAACATGTGAAATTTAGATGTTATGGCTATGTTGTGTCTTGAAAAAGTTTttgttttaaattattattacagCAGGTGATTCTTGttttgtgtatgtctgtgtttttGTACAACCTTGTTTTTGGTGACCGATTCGATAACCTTATTAAAAGTTCATAATTACTTTCTGTGCACCATTTTGTACCTGACTTCCTTGTATGTGACTTGAATATTGTGAAATGGCAATGGTTAAATTGACTATTAGAAATAATACAAGATATAACACACCACAAAATACTGTCATACAAATACAAATTGTTTATTAACAACATTATTATATCCCCAAAGATTCCTAGTCATGTAAAGCATAATGACCAAAATAAATGATGCCTTAAACATT

Function

NR:

description
collagen alpha-1(X) chain-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585689.2 True 2733 mRNA 0.52 3 10121050 10126999

Neighbor

gene id symbol gene type direction distance location
gtf2a2 gtf2a2 coding downstream 726636 9391961 ~ 9394414 (-)
otud7a LOC106591491 coding downstream 736059 9258976 ~ 9384991 (-)
LOC110516734 LOC107593117 coding downstream 1012801 9090166 ~ 9108249 (-)
LOC118944560 LOC106587999 coding downstream 1047708 9043417 ~ 9073342 (-)
LOC110500985 LOC106595573 coding downstream 1084664 9025778 ~ 9036386 (-)
fhl5 LOC106561894 coding upstream 40110 10167109 ~ 10184060 (-)
fut9a LOC106561893 coding upstream 86535 10213534 ~ 10225704 (-)
manea LOC106561892 coding upstream 101345 10228344 ~ 10238666 (-)
syt14a syt14 coding upstream 180298 10307297 ~ 10440791 (-)
LOC110506249 NA coding upstream 324910 10451909 ~ 10453142 (-)
G1996172 NA non-coding downstream 840 10119609 ~ 10120210 (-)
G1995307 NA non-coding downstream 14314 10106382 ~ 10106736 (-)
G1995294 NA non-coding downstream 16049 10066308 ~ 10105001 (-)
G1995297 NA non-coding downstream 18454 10069455 ~ 10102596 (-)
G1995301 NA non-coding downstream 23114 10078163 ~ 10097936 (-)
G1996244 NA non-coding upstream 69312 10196311 ~ 10196531 (-)
G1996249 NA non-coding upstream 78306 10205305 ~ 10205540 (-)
G1996251 NA non-coding upstream 80315 10207314 ~ 10207622 (-)
G1996202 NA non-coding upstream 99106 10226105 ~ 10228239 (-)
G1996207 gnmt non-coding upstream 142033 10269032 ~ 10277730 (-)
G1994812 NA other downstream 619397 9500716 ~ 9501653 (-)
G1994786 NA other downstream 672556 9447593 ~ 9448494 (-)
G1994674 NA other downstream 940345 9177038 ~ 9180705 (-)
LOC110527031 LOC106587988 other downstream 1372306 8564300 ~ 8805872 (-)
G1996632 NA other upstream 795017 10922016 ~ 10924533 (-)
G1996949 NA other upstream 1291100 11418099 ~ 11418335 (-)
G1999856 NA other upstream 3210336 13337335 ~ 13338151 (-)
G1999980 LOC106561221 other upstream 3393687 13520686 ~ 13521520 (-)
G2000052 NA other upstream 3502785 13629784 ~ 13630075 (-)

Expression


Co-expression Network