syt14a (syt14)


Basic Information

Item Value
gene id syt14a
gene name syt14
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 10307297 ~ 10440791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585678.2
tttttttggttGACCAAATTCCACACTTTGAATCATTGAATTCCATTCAAAAACCCTTGCATTGTGGGTGaaaaaacgccacctgctggagaagacagattttgggcCTCAAGTCTCGGTGAATAGGAGTAGACCAACAGAAGGTAAGCTTCGTGATACACCAACCTTCTAGTGACCCCCCTTCCCTTTCGCTTACAATGCGTCTCTCCCCTTCTTCAACGATCGCTTTGGTTGAATCCAAAACAGAACATCATGGCGATTGATGGTGGTGAGCGCAACTGCGGAGTACATGAGCTCATCTGCATCAGAAAAGTCTCTCCAGAGACGCTGGGGTTTCTGACGGCCATCGGACTCTTCCTCATTCTGATGATTATCCTGTTCTTATACCTCAACAACAAGCTGTCACTTGAGAATGCTGGGAGCCGGCCATGCCTAGACGAGTTCAGGAAAACCAAGGAGTTGCAAGAAAAGATCTACCCTGACGGTGACCTGAAGGGTTCGTCGTCAGACAGCGAGGATGAGGTGATGGGCCAGTACCAAGAAGCAATCAACCGTTCGCAGGGTCTCCGAGGCGGGGCTAGCGGCAGCCAGTCAAATGGCTACGGCTGGGAGATGAGGCAGAAGTACAGCCCCCTATCAGCCGAGTATGACGGCTACAGCAGCGAGGCCTCGGCAGAGGACGCGAACTGCATCCAGAGGATGAGGCGAACGCCCCCGCTGGATGAGCTTCAACCACCACCGTACCAGGACGAGGACGGCTCCCCGCGGATGTCCTACACACCATCAGACCTGGGCGACGCCAAGTGCAACCTGTCCCAAAACAGCGACAGTCCCCATCACTCCTACGGCAAGTGTCCGAGCGAGGCCAGCAatggacaggagacagagagttaccTAAACAAGGGGTATGAGGAGGACATACCCAGCGACAGCACAGCTGTGCTTAGCCCAGAGAAGCCCTTATACAGGTCATGGTACAAGAGCAACGATAAACTACGTCGAAAACATAAGGACATGTCAGCCCGGGGGTCAGCGTCTCAGCTCCCCAAGGGCTATGAACCGGAACCCCTGGCCAAATATGGCACTCTAGATGTGGTGTTCGACTACAACTCCCAGGACCAGCGGCTGGCGGTGACGGTCACGGCCGCAACAGACATCCCGGCCCTCAAGCGTACAGGCAACGTTGCCTGGCAGGTACATCTGGTGCTGCTGCCCACAAAAAAGCAGAGGGCGAAGACGTGCATCCAGAAAGGGCCCTGCCCGGTCTTCACAGAGACCTTCCGCTTCAGTCACGTGGAGTCAGAGATGATCGGCAACTACTCCATTCGATTCCGTCTCTACAGCGTGCGGCGGATGAAGAAAGAGAAGGTGCTGGGAGAGAAGGTGTTCTACCTCACCAAGCTCAACTTGCAGGGCAAGATGTCGGTGCCGGTCATACTGGACCCCTGCTGTGCCTTCCCTCAGGGCGGTGAATCCCAGCCTAGTATATCGGAGATGTCCTGCAGCGAAAGTGCCTCTTCattccagtcagccagccaaggCTCCACACCAGAGATCTTGGTAGGGCTCGTCTACAATGCCACCACGGGCCGTCTCTCAGTGGAGATCATAAAAGGCAGTCACTTCAAAAATCTGGCTGCCAACAAGCCACCCAATACATATGTCAAGCTGACCTTATTGAACTCAATGGGCCAGGAGATGTCCAAGTGTAAGACGTCGATCTGCCATGGCCAGCCCAACCCTACATACAAGGAGACGTTTGTCTTCCAGGTTGCCCTCTTCCAGCTGTCAGACGTGACGCTCATCCTCTCCGTGTACAACAAGCGCAGCATGAAGCGCAAGGAGATGATCGGTTGGATCTCGCTAGGCCTCAACAGCTCTGGAGAGGAGGAACTCACTCACTGGACCCAGATGAAAGAGTCCAAAGGACAGCAGGTCTGCCGGTGGCACAGTCTGTTGGAATCATAGACCGACAGAATACAGGAGGAAGCAAAGGTGGCtgagaagaaggaagagagggatggggaacaGAGGCACGGCTAAGCCCATAGGTGTCTCTGCTCAGGTGAAACATTCTTTATGTGGACTGGGTTGATGGGTTGGGCATGGTGGGTGGTGTTATGTGGTCTAGGCGATGGCAAATGACTTGACAGTGTTACTTAATATGCCAGATTTTTTAAATCGTCTTTGATTAGGTTGAACACTTAGGATGAACACTTGTCAAAGCTGATACGAAATTCCCTGCAGGGTCCTAGCATCTTGTCATGGTTGCAATACATTTACAATTTGACACATTGGGTGAAATATTTACAGTGCAAAATCTGTGCTGTAATTGAAAGAGATCATATTACTTCAAGTGCTTACTGCTCCATCTATTGTTTCCACATGTGTTTGGGAAGCAaagatagatacagtatgtattgcATATCTGCACTGTTTAATGCTAAACCTGGATGAATCATCGATTCTCTCACGTAATTGTACAATGAGAGGAATAGGAATACATTCTGTTTTGACAATAGCAGTGCTCTTTCGCAtgtacttacagtgcattcggaaagtattcagaccccttgacttttttcacattttgttacatttacaaccttattctaaaatagatttaataaaaaatgttcctcatcaatctatatacaa
>XM_021585679.2
tttttttggttGACCAAATTCCACACTTTGAATCATTGAATTCCATTCAAAAACCCTTGCATTGTGGGTGaaaaaacgccacctgctggagaagacagattttgggcCTCAAGTCTCGGTGAATAGGAGTAGACCAACAGAAGGTAAGCTTCGTGATACACCAACCTTCTAGTGACCCCCCTTCCCTTTCGCTTACAATGCGTCTCTCCCCTTCTTCAACGATCGCTTTGGTTGAATCCAAAACAGAACATCATGGCGATTGATGGTGGTGAGCGCAACTGCGGAGTACATGAGCTCATCTGCATCAGAAAAGTCTCTCCAGAGACGCTGGGGTTTCTGACGGCCATCGGACTCTTCCTCATTCTGATGATTATCCTGTTCTTATACCTCAACAACAAGCTGTCACTTGAGAATGCTGGGAGCCGGCCATGCCTAGACGAGTTCAGGAAAACCAAGGAGTTGCAAGAAAAGATCTACCCTGACGGTGACCTGAAGGGTTCGTCGTCAGACAGCGAGGATGAGGTGATGGGCCAGTACCAAGAAGCAATCAACCGTTCGCAGGGTCTCCGAGGCGGGGCTAGCGGCAGCCAGTCAAATGGCTACGGCTGGGAGATGAGGCAGAAGTACAGCCCCCTATCAGCCGAGTATGACGGCTACAGCAGCGAGGCCTCGGCAGAGGACGCGAACTGCATCCAGAGGATGAGGCGAACGCCCCCGCTGGATGAGCTTCAACCACCACCGTACCAGGACGAGGACGGCTCCCCGCGGATGTCCTACACACCATCAGACCTGGGCGACGCCAAGTGCAACCTGTCCCAAAACAGCGACAGTCCCCATCACTCCTACGGCAAGTGTCCGAGCGAGGCCAGCAatggacaggagacagagagttaccTAAACAAGGGGTATGAGGAGGACATACCCAGCGACAGCACAGCTGTGCTTAGCCCAGAGAAGCCCTTATACAGGTCATGGTACAAGAGCAACGATAAACTACGTCGAAAACATAAGGACATGTCAGCCCGGGGGTCAGCGTCTCAGCTCCCCAAGGGCTATGAACCGGAACCCCTGGCCAAATATGGCACTCTAGATGTGGTGTTCGACTACAACTCCCAGGACCAGCGGCTGGCGGTGACGGTCACGGCCGCAACAGACATCCCGGCCCTCAAGCGTACAGGCAACGTTGCCTGGCAGGTACATCTGGTGCTGCTGCCCACAAAAAAGCAGAGGGCGAAGACGTGCATCCAGAAAGGGCCCTGCCCGGTCTTCACAGAGACCTTCCGCTTCAGTCACGTGGAGTCAGAGATGATCGGCAACTACTCCATTCGATTCCGTCTCTACAGCGTGCGGCGGATGAAGAAAGAGAAGGTGCTGGGAGAGAAGGTGTTCTACCTCACCAAGCTCAACTTGCAGGGCAAGATGTCGGTGCCGGTCATACTGGACCCCTGCTGTGCCTTCCCTGGCGGTGAATCCCAGCCTAGTATATCGGAGATGTCCTGCAGCGAAAGTGCCTCTTCattccagtcagccagccaaggCTCCACACCAGAGATCTTGGTAGGGCTCGTCTACAATGCCACCACGGGCCGTCTCTCAGTGGAGATCATAAAAGGCAGTCACTTCAAAAATCTGGCTGCCAACAAGCCACCCAATACATATGTCAAGCTGACCTTATTGAACTCAATGGGCCAGGAGATGTCCAAGTGTAAGACGTCGATCTGCCATGGCCAGCCCAACCCTACATACAAGGAGACGTTTGTCTTCCAGGTTGCCCTCTTCCAGCTGTCAGACGTGACGCTCATCCTCTCCGTGTACAACAAGCGCAGCATGAAGCGCAAGGAGATGATCGGTTGGATCTCGCTAGGCCTCAACAGCTCTGGAGAGGAGGAACTCACTCACTGGACCCAGATGAAAGAGTCCAAAGGACAGCAGGTCTGCCGGTGGCACAGTCTGTTGGAATCATAGACCGACAGAATACAGGAGGAAGCAAAGGTGGCtgagaagaaggaagagagggatggggaacaGAGGCACGGCTAAGCCCATAGGTGTCTCTGCTCAGGTGAAACATTCTTTATGTGGACTGGGTTGATGGGTTGGGCATGGTGGGTGGTGTTATGTGGTCTAGGCGATGGCAAATGACTTGACAGTGTTACTTAATATGCCAGATTTTTTAAATCGTCTTTGATTAGGTTGAACACTTAGGATGAACACTTGTCAAAGCTGATACGAAATTCCCTGCAGGGTCCTAGCATCTTGTCATGGTTGCAATACATTTACAATTTGACACATTGGGTGAAATATTTACAGTGCAAAATCTGTGCTGTAATTGAAAGAGATCATATTACTTCAAGTGCTTACTGCTCCATCTATTGTTTCCACATGTGTTTGGGAAGCAaagatagatacagtatgtattgcATATCTGCACTGTTTAATGCTAAACCTGGATGAATCATCGATTCTCTCACGTAATTGTACAATGAGAGGAATAGGAATACATTCTGTTTTGACAATAGCAGTGCTCTTTCGCAtgtacttacagtgcattcggaaagtattcagaccccttgacttttttcacattttgttacatttacaaccttattctaaaatagatttaataaaaaatgttcctcatcaatctatatacaa
>TU2284741
AATATTTACAGTGCAAAATCTGTGCTGTAATTGAAAGAGATCATATTACTTCAAGTGCTTACTGCTCCATCTATTGTTTCCACATGTGTTTGGGAAGCAaagatagatacagtatgtattgcATATCTGCACTGTTTAATGCTAAACCTGGATGAATCATCGATTCTCTCACGTAATTGTACAATGAGAGGAATAGGAATACATTCTGTTTTGACAATAGCAGTGCTCTTTCGCAtgtacttacagtgcattcggaaa

Function

symbol description
syt14 Predicted to enable identical protein binding activity and phospholipid binding activity. Predicted to be integral component of membrane. Implicated in autosomal recessive spinocerebellar ataxia 11.

NR:

description
PREDICTED: synaptotagmin-14 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585678.2 False 2658 mRNA 0.50 9 10307297 10440791
XM_021585679.2 False 2655 mRNA 0.50 9 10307297 10440791
TU2284741 True 258 lncRNA 0.36 1 10307395 10307652

Neighbor

gene id symbol gene type direction distance location
manea LOC106561892 coding downstream 68631 10228344 ~ 10238666 (-)
fut9a LOC106561893 coding downstream 81593 10213534 ~ 10225704 (-)
fhl5 LOC106561894 coding downstream 123237 10167109 ~ 10184060 (-)
LOC110506256 LOC106561895 coding downstream 180298 10121050 ~ 10126999 (-)
gtf2a2 gtf2a2 coding downstream 912883 9391961 ~ 9394414 (-)
LOC110506249 NA coding upstream 11118 10451909 ~ 10453142 (-)
zgc:85722 LOC106561887 coding upstream 14410 10455201 ~ 10547182 (-)
kcnk5a kcnk5 coding upstream 147679 10588470 ~ 10645882 (-)
kcnk17 LOC106562019 coding upstream 252783 10693574 ~ 10733938 (-)
LOC110506078 kif6 coding upstream 333255 10774046 ~ 10873761 (-)
G1996212 NA non-coding downstream 523 10306263 ~ 10306774 (-)
G1996208 NA non-coding downstream 4635 10302075 ~ 10302662 (-)
G1996209 NA non-coding downstream 7482 10298037 ~ 10299815 (-)
G1996283 NA non-coding downstream 11885 10295200 ~ 10295412 (-)
G1996207 gnmt non-coding downstream 29567 10269032 ~ 10277730 (-)
G1996216 NA non-coding upstream 180448 10621239 ~ 10622131 (-)
G1996452 NA non-coding upstream 213926 10654717 ~ 10654950 (-)
G1996455 NA non-coding upstream 219522 10660313 ~ 10660786 (-)
G1996479 NA non-coding upstream 256229 10697020 ~ 10697333 (-)
G1996485 NA non-coding upstream 269515 10710306 ~ 10710554 (-)
G1994812 NA other downstream 805644 9500716 ~ 9501653 (-)
G1994786 NA other downstream 858803 9447593 ~ 9448494 (-)
G1994674 NA other downstream 1126592 9177038 ~ 9180705 (-)
LOC110516734 LOC107593117 other downstream 1199138 9090166 ~ 9108249 (-)
LOC110527031 LOC106587988 other downstream 1558553 8564300 ~ 8805872 (-)
G1996632 NA other upstream 481225 10922016 ~ 10924533 (-)
G1996949 NA other upstream 977308 11418099 ~ 11418335 (-)
G1999856 NA other upstream 2896544 13337335 ~ 13338151 (-)
G1999980 LOC106561221 other upstream 3079895 13520686 ~ 13521520 (-)
G2000052 NA other upstream 3188993 13629784 ~ 13630075 (-)
G1996285 NA non-coding upstream 1386 10309038 ~ 10309299 (-)
G1996219 NA non-coding upstream 21859 10329511 ~ 10330064 (-)
G1996303 NA non-coding upstream 32666 10340318 ~ 10340637 (-)
G1996309 NA non-coding upstream 40926 10348578 ~ 10348933 (-)
G1996318 NA non-coding upstream 52377 10360029 ~ 10360250 (-)

Expression


Co-expression Network