LOC118944446 (LOC106587903)



Basic Information


Item Value
gene id LOC118944446
gene name LOC106587903
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 50008794 ~ 50020545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036963834.1
CACAATGCAGAGGCAAGTGGAGGTCAGAATGCATGAAAGCCATTTGGAGCCCATCGTGGAGCCTCCTCAGCCTATGTGTTGGGGAATATGCAGCAAAATCATGAATAACTTGGTCCTTTTCCTCACCATCCTTGgtGTGATCACAGGCTCTGTTTCTGGAATACTACTGCGTCCCATGTCGCCGCTCCCCCCTGATGTAGTCATGATCATCTCGTTCCCAGGAGACATCCTGATGAGGATGCTGAAGATGCTCATCCTGCCCCTGATCATCTCCAGTCTCATCACAGGACTGGCAGGGTTGGATGCCAAGTCCAGTGGCCGCCTGGGCACCCGAGCCATGGTGTACTACATGTCCACCACAGTCATCGCTGCCGCTCTGGGTGTCATTCTAGTGCTGCTCATCCACCCTGGTAACCCCAAGCTGAAGTCCAACCTTGGGCCTGGCAAGAAGAACGACGACGTCTCCAGTCTGGACGCTTTCTTCGATCTAATTCGAAACCTTTTCCCAGAAAACCTGGTTCAGGCCTGCTTCCAGCAGATCCAGACAGTCACCACAAAAGTCCCCGTACCTACCAACAGGACCAGGGGTCCACCACAGTTTACCATCAAAAGGGGTCTTCAGTACAAGAGTGGGATGAATGTGCTAGGTTTGATCGGTTTCTTTGTGGCTTTCGGGATAAtcatggggaagatgggagaaaAGGCCAAGCTCATGCTGGAGTTTTTTAACGTTCTCAACGAGATCGTCATGAGGATTGTTGGCATGATTATGTGGTATTCCCCTTTCGGTATCGCCTGTCTCATCTGTGGGAAGATCATCTCAATCGATGATCTGGAAATGGTTGCCAGGCAACTGGGAATGTACATGGTGACCGTGATCGTGGGCCTTGTCATCCACGGTGCCATATTTCTACCACTAATATACTTAGTCATCGTGAAGAAAAACCCCTATGTCTTCTTCATGGGAATCTTCCAGGCCTGGGTCACCGCTATTGGGACAGCATCTAGTGCTGGTACCCTGCCAGTCACATTCCGCTGTCTGGAGGAGAACTTGGGCATCGATAAGCGAGTGACGCGATTCGTGCTCCCCGTGGGCGCCACTATCAACATGGACGGCACTGCGCTTTACGAGGCCGTGGCAGCCATCTTCATCGCCCAGATGAATAACATCGACCTCGACTACGGCCAGATCGTCACTGTCAGCCTGACAGCAACCTTGGCCAGTGTGGGAGCGGCCAGTATCCCCAGTGCTGGATTGGTGACCATGCTACTGATCCTAACAGCCGTTGGGTTACCCACCCAAGACATCAGTCTGTTGGTGGCTGTTGACTGGCTGCTggaTCGGTTCCGAACCTCCGTCAACGTGGTTGGGGACTCCTACGGGGCCGGTATCGTTTACCACCTGTCCAAAGATGAGCTCGATGCGTTTGACGCCGCGCAAAAAGTTGATGAATTTGAGTTGACAAAATCCCAATCCTTCTTCGAGAACAACACCAACCAGTGTGTTTACGCTGCAGCCCACAGCACAATCATGATAGATGATTGCAAGGTATCCATGGGCAATGGAAACGGCCACCCCAACGGCCACCCCAACACTGCAGATTTCTCTCTTGTTGAGGAGGAACCATGGAAACGAGAGTAAAGCAGCACCCTGCTCCGACCTCATCctgacttccacaagcttcccttcCTGACCAAAATAAAGAACGTAACCACACTTAGCCCTGTAATCACAAGCTTTGGTGCATCAGTCTTACTTCCTGTGGTCTGACTATGGTCAGTTCATTGACTATGGGATGAAGCTCCCCTCCCACAAAGACAACGTAGGTACGCATCCACTTGTACCTATCTTAAACAATTAGATTAGGACTTCCAAATGACATTGCTTAAGCTGTGCTGGTGAtttttaaggcattgtttagtatgATGGACCCATTCAGGTGGTTGTATTCTGAACCTTACTCGACAGTGCATGTTCTCTGATGTACGCAATGCCGCACTTTTGTTGCTGCTCAACCTTTTGGGGAAAAAGCAATCCTTCTGTCTGTTTTATGTATAAAAAATGTAGGGGTTTTGTTAGCGCCAGAGGCAGTTCAGAGAATGTGTGCTTATGGGA

Function


NR:

description
PREDICTED: excitatory amino acid transporter 2-like isoform X1

GO: NA

KEGG:

id description
K05613 SLC1A2, EAAT2; solute carrier family 1 (glial high affinity glutamate transporter), member 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036963834.1 True 2116 mRNA 0.50 9 50008794 50020545

Neighbor


gene id symbol gene type direction distance location
LOC110514611 LOC106593737 coding upstream 22341 49969549 ~ 49986453 (+)
LOC110517837 LOC106562510 coding upstream 43287 49949158 ~ 49965507 (+)
LOC118944431 NA coding upstream 57563 49948796 ~ 49951231 (+)
LOC118944495 LOC106562569 coding upstream 68196 49938071 ~ 49940598 (+)
LOC118944429 NA coding upstream 640458 49363829 ~ 49368336 (+)
LOC110526794 apip coding downstream 20563 50041108 ~ 50048587 (+)
LOC110506980 LOC106593359 coding downstream 89401 50109946 ~ 50151723 (+)
LOC110506984 LOC106562578 coding downstream 323436 50343981 ~ 50349532 (+)
LOC110506216 traf6 coding downstream 339966 50360511 ~ 50373096 (+)
LOC110506995 LOC106562863 coding downstream 420022 50440567 ~ 50446781 (+)
G2037429 NA non-coding upstream 17772 49988984 ~ 49991022 (+)
G2037397 NA non-coding upstream 85536 49922820 ~ 49923258 (+)
G2037375 NA non-coding upstream 87816 49885890 ~ 49920978 (+)
G2037374 NA non-coding upstream 123601 49884941 ~ 49885193 (+)
G2037433 NA non-coding downstream 2173 50022718 ~ 50107655 (+)
G2037465 NA non-coding downstream 64336 50084881 ~ 50085983 (+)
G2037511 NA non-coding downstream 140946 50161491 ~ 50162384 (+)
G2037524 NA non-coding downstream 169051 50189596 ~ 50190346 (+)
G2037387 NA other upstream 98278 49909056 ~ 49910516 (+)
G2036925 LOC106563534 other upstream 605782 49401400 ~ 49403012 (+)
G2036906 NA other upstream 652250 49356195 ~ 49356544 (+)
G2036631 NA other upstream 712433 49295152 ~ 49296361 (+)
G2036456 NA other upstream 1167081 48840981 ~ 48841713 (+)
G2037833 NA other downstream 300377 50320922 ~ 50323439 (+)
G2037834 LOC106562711 other downstream 307775 50328320 ~ 50329070 (+)
LOC110527008 pex16 other downstream 776753 50744617 ~ 50803181 (+)
G2038302 NA other downstream 980206 51000751 ~ 51003835 (+)

Expression



Co-expression Network