G1996689


Basic Information

Item Value
gene id G1996689
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 11014956 ~ 11016796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2285243
gtgtggattaattgtccgagtagaagaccttgtgcatttcaggtaaaataacaactcaatgtttatatcccaggacaaattagctagcaacagcaagctagctaaatagatcaaattagttagcaacagcaagctagctttTCAACCTGTcaccaaattaatgtaattggttcagagtttgttttcacattttaacctgcgtgtcgtgatcacgtttggtgtgggggggacaaaataaTGTATGCACAATAGCACACGcgcacagccggtttgggttccgtgttagtgagcatttctcctttgccaagacaatccatctaCCTtctaggtgtggcatatcaagaagctgattaaacagcatgatcattacacaggtgaaccgtGTGCTGGGGCCAATAAAAGGTCACTAAActgtgcagttgtcacaacacaatgccacagatgttccAAGTTGAGGAAGTGTaattgccatgctgactgcaggaatgtccaccagagcagttgccagagaatttaatgttaatttctctatcatatGCCGCTGCAAGACAAAAGCATGCCTTTAGATTCGAAGCTGGAGCACAGAGTTTTATTCTTTACAGGGGAGACGTGTTTTGACAAATTGGTTGTGTAAAACACACCCGAAATGTTTCACAAGCCAAATTGTACAGCGAGATTTAAGAAAAGGTATGGATAGACCGCTGACCAGATAATGATACTGTGTTTTCCACTCTCCTTTGTCTAGTTGATAGAAATGTTGAGGTCAGACAGTGCCCTCCATCTGTAGCGACTGGAATGACAAAAGTCATCACAGTTTAGCCCACTGAACATACACAGCAAATATAATTGTAGTCAAAAACAGAAAACATACGCCGATTAAATCAAACTGGCCTGCACAATCAATGTATAGTAGCCCAACAATGGACATGGACAGATAAAGCCTGATGTCATTTTTAGCAAAAATGGTCTTCCAAAACCATTTGCTAAACCATCCCACCTGAAGCACATAACGCTAGTTATGCATGTTCGTGAGCAAAACGGCATTACGCATTTAACGATTTACCTTCCAGCTGGTGTTCCCATACAGTATTTTGGTAGGTAATGGTGGAGCTTTTCGATTAGGATAAATACATAGCCTACGAATTGCCCTTTGATGTGTGTTCTCATCGTGAAACAAAATGTTTTACACTGCAGATGAACTGCTCCACAGAAAGCAATGATCTCTCATCATAATATTTTTATTGGCCAAATTTGCATATCTAGGTTTCATAGTAGCCATCATGAGTGGAAGTATTTAATAGATTAGAGACCTGAAACCGCATAGACTATAGCCACATACAATTAAATTATGCAACTTACATTTGGATACACGCACAAAACATTGATCTACAAAGTATCAGTGCCATGACATATGTCCAATAGACTACCACAATTTTACTAAATACCGAAGTGGAGGATGTGGTTTTACCTTTTCTGGCACTGGCCATTGAATCTCTGAAAACCAAACGAGGGGAGCGCTCCAAATTAGCCTAACCATTATCAGCAAATAAAACATACATTTGTGACTTACCAACTGGTTTCATTTCAGGGAAACGTGTCGTTCGATAATAATCCCTTGAAGTTGTAACCATCAAAAGATACAAGCACACAGACAGGTTAAAGCCAATGAAGAACGATGCCTACTTGGTAGGTTTAAGTCGCCTCCCTCGCTCTCCCGCAGACTGTTCATCCGCCCGCTACACTCACAGCGAATGTGACCGGTTTGTGTAAACGAGCAGAGAAGTAGAAATCAGTCCAAACATAACCATCAGCCCTCCTACTCACACCCTCTTAAAGGTACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2285243 True 1841 lncRNA 0.41 1 11014956 11016796

Neighbor

gene id symbol gene type direction distance location
kif6 kif6 coding downstream 28341 10882204 ~ 10986615 (-)
LOC110506078 kif6 coding downstream 141195 10774046 ~ 10873761 (-)
kcnk17 LOC106562019 coding downstream 281018 10693574 ~ 10733938 (-)
kcnk5a kcnk5 coding downstream 369074 10588470 ~ 10645882 (-)
zgc:85722 LOC106561887 coding downstream 467774 10455201 ~ 10547182 (-)
LOC118944586 NA coding upstream 31623 11048419 ~ 11048572 (-)
mocs1 LOC100196496 coding upstream 235039 11251835 ~ 11301417 (-)
LOC118944497 NA coding upstream 306372 11323168 ~ 11325682 (-)
LOC110506257 LOC106561882 coding upstream 1021336 12038132 ~ 12419690 (-)
LOC110506258 LOC106561881 coding upstream 1553401 12570197 ~ 12616568 (-)
G1996580 NA non-coding downstream 155938 10858712 ~ 10859018 (-)
G1996575 NA non-coding downstream 160342 10854367 ~ 10854614 (-)
G1996564 NA non-coding downstream 180909 10833841 ~ 10834047 (-)
G1996562 NA non-coding downstream 181749 10832999 ~ 10833207 (-)
G1996553 NA non-coding downstream 195861 10818606 ~ 10819095 (-)
G1996690 NA non-coding upstream 645 11017441 ~ 11018390 (-)
G1996692 NA non-coding upstream 3492 11020288 ~ 11020497 (-)
G1996714 NA non-coding upstream 36067 11052863 ~ 11053135 (-)
G1996671 NA non-coding upstream 38976 11055772 ~ 11082825 (-)
G1996805 daam2 non-coding upstream 179256 11196052 ~ 11196364 (-)
G1996632 NA other downstream 90423 10922016 ~ 10924533 (-)
G1994812 NA other downstream 1513303 9500716 ~ 9501653 (-)
G1994786 NA other downstream 1566462 9447593 ~ 9448494 (-)
G1994674 NA other downstream 1834251 9177038 ~ 9180705 (-)
LOC110516734 LOC107593117 other downstream 1906797 9090166 ~ 9108249 (-)
G1996949 NA other upstream 401303 11418099 ~ 11418335 (-)
G1999856 NA other upstream 2320539 13337335 ~ 13338151 (-)
G1999980 LOC106561221 other upstream 2503890 13520686 ~ 13521520 (-)
G2000052 NA other upstream 2612988 13629784 ~ 13630075 (-)
G2000879 NA other upstream 3261345 14278141 ~ 14278746 (-)

Expression


Co-expression Network