G2000882


Basic Information

Item Value
gene id G2000882
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 14283071 ~ 14288867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2289558
AAGATGGAAAATGGGAGAAAAAGGGACCGAGAATGGGCAGAGGTATGAAAAATGTGGTTGtgaagaagagaggacagagtgagggtGTTGGAGGGTAGGTAAGAAAGAGAAAGACGGGGGGTGAGAGGAAAGAGTGAGACACTGTTACAGAGGGTGAATAGTAGGGATGGGGGGAAAAAATCAATACGGTAGAGCAAGGCTATCCAACCTcattcctggagagataccctcctgtaggttttcactccaacgcTAGTTGTAACTAACCTTATTCAGTTTATCAAACAGCAAATTATTAGAAttaggtgtgctagattaggtttggagtgaaaacctacaggatggcagctctccaggaacagggttagagagccctgcaGCACAGTATTGCAGTATTACTTTTGATGATATTATATAGTTTCTATGTATTGATTCTTTTGCTaggtagttaacgttagctagcaataGTCGGCTGTACCTGCCACCAAAATCTGgcatttttcatttatttttaaatggtGATCCAaaatgttttcagcacttttgtttctgtgactgatcaaaacttgttttctcatggctctttCTTGTCCCTCTGCAAAAGCCAACGTCAGCAATAAGCCTATGTTTGCAATAAGTATCAGTATCAAATTGCAATTCATACAGAATCGTGATACATCGtgatacatatggaatcacaatacatatcgaATTGGCACCTAAgcatcgtgataatatcgtattgtgaggtTCCTGGCAATTCACAGCCCTAGTGaataaaaagaaagagagagggagggggatgagaaaagagagagctgCTGAttagcagctctctctctcgctttctctcgcccGATCGGAATACCTCACCATCAAATAACGACTGCATTACCTCTCAAGAGAATTTTCTTCGATCATTGTCATGACCATCTATATTCCCCCCAAGCCAACAACGCTACAGCTCTCAATGAACTACACTGGAATTTTTGCCAAATGGAAACCGAATATCCTGaagccacatttattgtagctggggactttaataaagAAAATCTGAAGAAAGCGCAACCGAAGTTCTTGCAACACATCTTCTGTGCTACTTGCTCATCGAGCACGCTTGAAGATTGCTACTCCCTGATCTGAgatggctacaaggccctcccccaccgtCCTTTTGGCAAACGAGATCATGCCTCAATTTTGctcctcccctcctataggcagaaacttaaaCTGTAACGACTGTTCAAcattggtctgaccaatcagaatctatGCTTCAgttttgttttgatcacgcagactgggaaatgttcctgGTTGCCTCCGAGAATAGTAAAATTGTATACACGAACTTAGGCCCTCCGTAAGGGAAGGCCAATATAATCATCAAGGACTTcagagccacggcctgttcacccagttaccatctagaaggtggatacagtacaggtgcatcaaagctgggacagagagactgaaaaacagcttctatctccaggccatcagactgttaaatagtcaccacaaGCCGCCCAGTACCACCCGATAATCTACCCTGCAACTTAGATATTGCTGCCCTATGTACGTAGCCATTGAACACAGGTCAATTGAACAATGTTTACATACCATTTTGTCCACGTCAtaccagtaccagtcaaaagtttggacacacctactcaaagggtttatctttatttttatgtttttccacattgtagaataatagtgaagacatcaaaactatgaaataacacatggaaccaATAAAGTGTGAAACATATCAaagagatttgagattcttcaaagtagacactcttagcattctctcaaccagcttcatgaggaatgctttttcaacagccttgaaggagttctcgcatatgctgagcacttgttggctgcttttccatcactctgcagtccaactcatcccaaaccatctcaattgggttgaggtcgggtgattgtggaagccaggtcatctgatgcagcactccatcactctcctttttggtcaaatagcccttacacagtctggagatgtgttgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcacaaaactgcggtagccgtgctggttaagtgtgctttgaattctaaataaatcacagactgcgtcaccagcaaagcacccccacaccatcacacctcctcctccatgcttcacggttggaaccaaacgtgcagagattatccgttcacctactctgagtctcacaaagacacagcggttggaaccaaaaattgcaaatttggactcatcataccaaaggacagatttcctaaTGTCCATTGGTtgggtttcttggcccaagcaagtctcttcttcttattggtccttttgtagtggtttctttgcatcaatttgACTATGAAGGCATGctttacgcagtctcctctgaacagttgatgttgagatgtgtatgttacttgaactatgtgaagcatttatttggcctgcaatttctgaggctggtaactctaatgaatttttcctctgcaacagaggtaactctggatcttcctttcttgtggctgccctcatgagagccagattcGTCATATTGCATATAGcttcaaagttcttcaaattttGCAGATTGGCTGACCTccatttcttaaagtaatgatggactgtcgtttctctttgattatttgagctgttcttgcgataatatgtacttggtctttcatcaaatagggctatcttctgtataccccctaccttgtcacaacacaactgattggctcaaacaaggcacatctgttaatttaaatgcattccaggtgactacctcatgaagctggttgagagaatggcaagagtgtgcaaagctgtcatcaaggcaaatgttggctactttgaagaatctcaagtataaaatatattttttggttgaacacttttttggttactacatgattccatgtgttatttcatagttttgtatgtagaaaatagtaaaaataaagaaaaaactttgaatgagtaggtgtgtccaaacatttaaCTGGTACTGAACATTTATATACTGCATTATAgacaaggctcatcctatataactacttcTGTACACATCTTTTCTAttaatatactgtccatactgtctatacacaacacactgcaaccttaaaggtcctcaatgatttcactattgcccttgattctaagcaatgttgtcctgctatttttattgactttacgaaagcttttgatatggtagaccaggtattcccaaactagGGTACgcacaatgccgtcgggggtacggcaaacaaaaatgtgaatcacattttatatatttttttatcgtTTTTGACTTctctttcttcacattttcaaacagtccatttatattttccaatggggctatacatttgagtgagttttttttctcgcctgagtagcctcatttcactgccaaaaCCATTAAACTATCTaatgttcagcgaaataacaacacaatgtcaaatacaggtagcctagtcaaataattaacatgcAATCACATTAAACATTACTCACTCGCGGGAAATCCACTAATGgaccgtatgtagccaaacatagctgctgctcatgttggtatctgtactgatggcgcaaaagccatgacagggagacatagtggagtggtaagccgcatgcaagcagttgctcccgacaccacttgggtacactgcagcatccaccaccaagggaatgcctgacagcttgaaagacgttttggacactacagtgaaaatggttaactttgttaaagcaaggcccctgaactctcgtgtattttctgcaatatgtaatgatatgggcagtgaccatgtaacgcttttacaacatacagaagtgcgctggttatcaaggggcaaagtatttaaacattttttgtaattgagagacgagcttaaagttttctttactgaccataattttttacttgtctgaccgcttacatgatgacgagtttctcacacgcctggcctatctgggtgatgttttttctcacctgaatgatctgaaaataggattacagggactctccgcaactatattcaatataCGGGACAAAATTAAGACTCTgtttaagaagttggagctcttctctgtctgcattaacaaggaaaacacacattgtatgattttttgtgtgcaaatgaactctaGCTTACGGCCAATGTCAAATCAGGTctggcaagtaagttaagaacaatttcttatttacaatgacagcctactggggaacattgggttaactgccttgttcaggggcagaacaacatattttttaccttgtcagttttcGGATACTGGCCCAATGAtgtaaccacttggctacctgccccccggatgacacaaacaactggattcgttatccctttcatgctctGCCTCCAGTCCtaaatttaatttaatcagaagccactgccaactgcggtagaccattccattcttgtcagtcggctaaggagtattggtgtctctgagggacTTTGACCTGGTTTTGctaactatctctctctttgCCTGTCACCAAAgtagtaccccaaggctcaatccttggccccacgctcttctcaatttacataaacaacatagctcaggcagtaggaagctcccTCATCCCTTTATATGCAGATAATACAtacttgagaTTCTGACTAGacagtgcactgtccttctctcaacaCATATCAAACCACCAccgctgccaaactaaccctgattcagatgactatccaacccatgctagattacaaaAAACGTCATTTATAGATTGGccggtaagggtgctctcgagcggctagatgttctttaccattcggccatcagatttgccaacaatgctccttataggacacatcactgcactctatactcctctgtaaactggtcatctgtGTATAcatgtcgcaagacccactggttgatgcatatttataaaaccctcttaggcctcactcccctcctatctgagatacctactgaagccctcatcctccacatacaacacccgttctgctaGTCATATTCGATTAAACggccccaaagcacacacatcccacaATCGCTCctattttcagttcgctgcagctagcgactggaactagctgcaacaaacactcaaactggacagttttatctccatgtcttcattcaaagacttaatcatggacactcttactgacagttgtggctgcttctcatgatgtgttgttgtctctaccttcttgccctttgtgctgttgtctgtgcccaataatgtttgtaccaggttttgtgctgctaccatgttgttgtcatgtcatgttgctaccatgctgtattatcacgtgttgctgccatgctatgttgttgtcttaggtctctctttatgtagtgttgtggtgtctctcttgtcgtgatgt

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2289558 True 5445 lncRNA 0.42 3 14283071 14288867

Neighbor

gene id symbol gene type direction distance location
trmt61b trmt61b coding downstream 1426407 12845479 ~ 12856664 (-)
LOC110506264 LOC106561878 coding downstream 1447782 12776493 ~ 12835289 (-)
LOC118944583 NA coding downstream 1491026 12791911 ~ 12792045 (-)
LOC118944582 NA coding downstream 1501545 12781392 ~ 12781526 (-)
LOC110506260 LOC106561879 coding downstream 1542128 12715303 ~ 12740943 (-)
LOC110506271 LOC106561903 coding upstream 29437 14318304 ~ 14368873 (-)
LOC110506081 prmt3 coding upstream 88551 14377418 ~ 14496552 (-)
LOC110506276 LOC106587060 coding upstream 324719 14613586 ~ 14678505 (-)
LOC110506082 LOC106561908 coding upstream 414241 14703108 ~ 14788733 (-)
LOC110506277 NA coding upstream 605628 14894495 ~ 14898577 (-)
G2000883 NA non-coding downstream 220 14281834 ~ 14282851 (-)
G2000881 NA non-coding downstream 1639 14281037 ~ 14281432 (-)
G2000872 NA non-coding downstream 14485 14268357 ~ 14268586 (-)
G2000859 NA non-coding downstream 31856 14250966 ~ 14251215 (-)
G2000758 NA non-coding downstream 99348 14088115 ~ 14183723 (-)
G2001414 NA non-coding upstream 250270 14539137 ~ 14539433 (-)
G2001416 NA non-coding upstream 252040 14540907 ~ 14541130 (-)
G2001449 NA non-coding upstream 297720 14586587 ~ 14587853 (-)
G2001456 NA non-coding upstream 318021 14606888 ~ 14621874 (-)
G2000879 NA other downstream 4325 14278141 ~ 14278746 (-)
G2000052 NA other downstream 652996 13629784 ~ 13630075 (-)
G1999980 LOC106561221 other downstream 761551 13520686 ~ 13521520 (-)
G1999856 NA other downstream 944920 13337335 ~ 13338151 (-)
G1996949 NA other downstream 2864736 11418099 ~ 11418335 (-)
G2003219 LOC106561912 other upstream 1426681 15715548 ~ 15718308 (-)
nav2a LOC106587075 other upstream 1666760 15900960 ~ 16211028 (-)
G2003819 LOC106561933 other upstream 2432124 16720991 ~ 16723682 (-)
G2005166 NA other upstream 3598578 17887445 ~ 17890081 (-)

Expression


Co-expression Network