G2005456 (LOC106561978)


Basic Information

Item Value
gene id G2005456
gene name LOC106561978
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 18194110 ~ 18199589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2294564
AGGTAATACAATGTTGATACTAATGCAGCACTACTGCTACATAAGTATTACTGCAGGAGAGTTATTATGCGTTTTTGACATTACATGAGATGAAATATCCCAGAGACTGAAGAATAAGGTCCACATACCTTTCCAACAGACTGCAGGAGAGACTCTACATGCTTAGACACGACAGAAGCATCTTGCATTGCCTTCTCTCTATAAACATTCTGGAGGTTGATGAACTTCTCCGAGTCCGCAATCATGTCTGGAATGGAGCCACGTACAGGTAGGTTTCCGCCGCCGTCGTTCTGCACAAACTCCCTCACTGCTCGAGTCATCACCCAGAAGGCTGGAGTCTGTGATGTAATGTCATTGCATTGCTCTCCATTGAAGAGGTCGTCAACGCCGTTCGAAATCTTGGTTGGGTTAAGGGCTGTGTTGACGTTCTTGATGGCCTCCTCAAAGTTCTCCTCAACCTCGGGAGTTCCCTTCTCATTCTTCAGGATTCCTTGCCGAATAAGCTGTTTGAAGGCCTCCTTCTCTTTGTAGTTCTTCGGTAACTGAAAATTGTGCTCACTGAACCACTTTTCTAGGTATTTGGCAACAATGATGATCCATGGTGTATGACCGTGATCCTTCTTCCCCATTCCCTCCAAGTCGTAGGACTGGATGTGGCTCTTGAGTTCTGCAAAAGGTTGGTCAAGCCTCAGGTCTTCCAAGGCGTTGTCTGGATGAGACTCAATCACTGTGTGTTCCTTCACTACTAGCCTCATGTAACCGACGAGGCCATACGTTCTACACACCAGGAAAGGTACATTTGCATTCCACAACACCGACCCCAGTCTCAAACACGTGCTTTCTGGCAGCTGGACACCAATCACCAGGGTAAACCGGTGGAAGAACTCTGGGTCGTTGTCCAAGAGCTTGTCTGGGCTCTCCTCCACAAAGTTGCCAGATACATCAGTGTTCAGCTCCTGTAGCAGCTCTGTGGCAGCCTGGGCTCGATTCCTTCCTATGCTGTTGTTGCTAAGAAAAAAGTTATTCCCGACGTCTTCCCCGGAGACTTTGTGTCCATCGACAATAGTGAATGCTCCAATTCCTGGAAGCACAAGGTTCTTGAGTATTTCAGTCCCGGATGCAGTGGAATTGATCAGGCATACGTGTGCATTTTCAAGTTCTTCTTGGCCATGGTCTCCCCACAATCTCAATTGTCTATCGTATTTCTGCTCTTTAGCAGTTTTAGTCGCTGCCATGGTCCGCTTGGAGAAGAATCCCACCAGTTAATTTGATAGCTATATTCGCTGATTCGATAGAGAGACAAGTGGGTGAACGCAGTTGTAAATTCAAAGCTGCACTTTCGATTTATCTACAGTTGACCACCAGATGGCGTAATAGAGAGTATTCAATCGATTCAAACCTGCGCAAAATGTTATTAATTATTTCTGCCACAGTTGCCACCACCCATTCAAACTAATCAAGGAATTTG
>TU2294566
CACTAAGCCTGTCACTTTCTTACTTATTCCCGACGTCTTCCCCGGAGACTTTGTGTCCATCGACAATAGTGAATGCTCCAATTCCTGGAAGCACAAGGTTCTTGAGTATTTCAGTCCCGGATGCAGTGGAATTGATCAGGCATACGTGTGCATTTTCAAGTTCTTCTTGGCCATGGTCTCCCCACAATCTCAATTGTCTATCGTATTTCTGCTCTTTAGCAGTTTTAGTCGCTGCCATGGTCCGCTTGGAGAAGAATCCCACCAGTTAATTTGATAGCTATATTCGCTGATTCGATAGAGAGACAAGTGGGTGAACGCAGTTGTAAATTCAAAGCTGCACTTTCGATTTATCTACAGTTGACCACCAGATGGCGTAATAGAGAGTATTCAATCGATTCAAACCTGCGCAAAATGTTATTAATTATTTCTGCCACAGTTGCCACCACCCATTCAAACTAATCAAGGAATTTG

Function

NR:

description
NEDD8-activating enzyme E1 regulatory subunit-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2294564 False 1468 TUCP 0.46 14 18194110 18199589
TU2294566 True 471 lncRNA 0.43 3 18194110 18195187

Neighbor

gene id symbol gene type direction distance location
LOC110506340 LOC106561977 coding downstream 675 18151069 ~ 18193435 (-)
LOC110506336 LOC106561971 coding downstream 226358 17908985 ~ 17967752 (-)
LOC110506335 LOC106561969 coding downstream 285989 17906684 ~ 17908121 (-)
LOC110506334 LOC106587126 coding downstream 313302 17870545 ~ 17880808 (-)
trnaa-ugc-182 NA coding downstream 321048 17872987 ~ 17873062 (-)
si:dkey-56m19.5 LOC106561979 coding upstream 47410 18242597 ~ 18248862 (-)
LOC110506347 LOC106561983 coding upstream 116524 18311711 ~ 18317587 (-)
LOC110506349 LOC106561985 coding upstream 122636 18317823 ~ 18320718 (-)
LOC110506350 spat2 coding upstream 133369 18328556 ~ 18331483 (-)
LOC110506088 LOC106561986 coding upstream 137443 18332630 ~ 18388978 (-)
G2005443 NA non-coding downstream 39636 18154058 ~ 18154474 (-)
G2005442 NA non-coding downstream 41927 18151852 ~ 18152183 (-)
G2005429 NA non-coding downstream 58888 18134999 ~ 18135222 (-)
G2005367 NA non-coding downstream 75520 18118065 ~ 18118590 (-)
G2005363 NA non-coding downstream 92057 18101788 ~ 18102053 (-)
G2005460 NA non-coding upstream 5760 18200947 ~ 18201700 (-)
G2005461 NA non-coding upstream 8942 18204129 ~ 18204333 (-)
G2005463 NA non-coding upstream 10325 18205512 ~ 18205806 (-)
G2005465 NA non-coding upstream 11546 18206733 ~ 18207013 (-)
G2005469 NA non-coding upstream 20821 18216008 ~ 18216227 (-)
G2005166 NA other downstream 304029 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 1470428 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 2234545 15900960 ~ 16211028 (-)
G2003219 LOC106561912 other downstream 2475802 15715548 ~ 15718308 (-)
LOC110506276 LOC106587060 other downstream 3560502 14613586 ~ 14678505 (-)
G2005584 NA other upstream 39087 18234274 ~ 18234536 (-)
G2009991 NA other upstream 3439092 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 4207831 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 5050597 23245784 ~ 23247139 (-)
G2012712 NA other upstream 6011093 24206280 ~ 24222078 (-)

Expression


Co-expression Network