LOC110507299 (LOC106580672)


Basic Information

Item Value
gene id LOC110507299
gene name LOC106580672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 787157 ~ 799246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587190.2
GTTTTATTTCCTCCCGTTTTTCCTGGCAAAAACAGAGTAGGCCTACTTCAtcataaatataaaatacatttgagaaATCTACTACTCACTCAGCCAGAACAATAGGCTACCTGacaatttgatagattattttttatatttcagATATACATAGTTTGGGTGGCTACTGGCTATATAACTAACGATAAACAGCTGTAAAATTGTAATATTTTGGGATGAAGATGTAACATATTCTGGCGACTTTATTACATTATTTGTGAGAAAGAACAGGGTTTAACGGCTGGCACGTTGAACTTGCACTATGCAGACAGGTTGCCCTCCAATGTGATGGCATGGTGCAGACAACATGTTTTCCATCCAATCCTGCAACATCTGCTACAAGGAGAGACCAATGAAAATGGCGGCGACAGGGTCGGTCAGATCCACCAGTGGATTGGGGCACAAATGCAAAGCCAGGCCCGCCGATATGCTGAAAACTCGGACACATTCACAGCTGCTGACGTTGGAGGAGGCAAGGTGTCCGGTTTGTTCGGAAATTTTATTAGAGCCCGTAACTATGCCATGTAGCCACTCGGTGTGTCTGCACTGTTTCAAGCGGACAGTTGAATTCACCAGTTTGTGCTGTCCCCTCTGCCGGCTGCGAGTATCCAGCTGGGCCCGTAAACAGTCCCGGGAGAAAAGCCTAGTTAACATCGAACTCTGGGAAATGGTTCGACAGAGTTACCCACAGCGATGCAAGATCAGAATGGAGCAGAGAGACTGTGAGACTGGTGGAGAAGACATTTTCCGCTCGCCTGCTCAGGTATCCAAATCTGGAGAGATCCGACTGGAGTATGGAAAGCAAAAAGTCCCAATCAATgaagagaaagaagaggggaggaggaaagtCCACCACAGAGAGGGATGTGGAACTCTCAAGCACTTTCAAGATCCTTTCTATGGGTTGCTGTCAGACTCGGAGAATGAAGAACCCATTGGGAAAAGAACCAGAAATGTGTCTGCATTTGTTAGAAGAACAAAGATCTCAGCTGGTCTACATACCAATGTGGTGCAGAGAAGCCAGAGCTGTACTGATCCAGAAGAGGGAAGGCGCAAAATGAGGGTGTCTACTCATCTTCCTGGACTGGACAAGGCAAGTATTGCTCACAGCTACAATGCAGGAATCCTTCTGTCCTCTGAGAACAGCCGATCTCTTTCGGCACCCATCATTGTCCAAGACAAGAGGCATATCTGGCGAGGCGTCATCATGGCGTCATCAACACCTTTTATGGTCCCCCAGTCGAAACAGGAGAGGTCCATTAGCCCTGAGAGCAATGACAGTATTTCTGAGGAGCTGAATCACTTCAAGCCAATAGTGTGTTCACCGTGCACCCCACCAAAGCAACTACCTGACGGGCGAGTGATGGAACCCACAATTGTGAAGTCCACCCCCCGGAACTTATTCCGCAGCCTGGAAAGGCCCACCAGCTATGAAGCGAGCCCTACTATCCTACAGAAATGGAAGCAGATAGAGGTGGACCGTCAGTCTGTCAAAGTGACCTCGAAGGGTACCTTGACCAACCCCATGAACGAGGACCTTGTCTTCAAACCAAGCCCCATAGAGGAGAAGGACGGCATGCCCTGTAGCTGCGCTCCAGCAGCAAGTAAGGGAAAAGAACACTTGGTTGTGTGTGCCAAGACTGATTCCTCTGGGCAAGAGAATGAAAGAACTTGTATACATAATAAACGAAGACTGATATTTGATCAGGCCATTGGAGAGACAGCGATCCATCAAAAACAATTCACAAAGTTTCAAACTCCATTTGTAGCCTTAACCAGTGAGGAGACTGTAAAAGAATGTGGGGTTTCTTTTGAGTCTGTGGTGGTACCTGAATTACATTGTGGACCAACTTCAATTCATCAAAATCCAACCGTAGTACCACATGATATAATTGCCAGTGTTAGGAGTTGCAAACTTAAATCAAAAGACTCACAGGATCAGAGAAAAGAGTTTGACAATAGAAACTGTGCCCAGAACCAACCTACCTCAAGGAGGGGCAAGAAGAGGAGCCAGAAGACCAAACACCTGGAAGAGACAGAGTCTGGACTCAAGAGGCCAAGATCCCAGAGCCAAGATGGTTTCAATATAGAGTGTGCGCAGGCTGAACTGTACATTCAACAGgttcagcaagagagagaggacagagagctagCGTTGAATCTTCAAAGACAGTTTGACAGCGAACAGCAACAAGAAGACAAGCAAAAGACCAGTCCCGACAAGTACTTTCTCCGGTCCTGCATGTCCAGTGAAAACAGAATCAAATGCAATCCACGCAGATCAGGAAGAATTTCCAAAAAGAATGAGCACTTTAATTGCTATTATTAAAGGGTTAttcttgttttatttatttatatttcaaTCAGACAACTTCTTGCATACAATAACTATACTGCTTTTGTTGCCCAGGTTCCAAATGCATTGCTTTTAAACAGAAACTAAACCCTAGCTAGCCTATGTCATAAATTGTTCATCTTCATTTGGTTGTATTCCTATTAGATGTAGTTTCTACGAACATGGTTTTGCTGAAACGTTAGGTACTATCGTTATTTATTTTCTTCTCGTTTGCAGTTACTCATAGAATTGTAAAATAGACACTAAATCATCATGCAGTTAATGCACTGTGAGAAAAAGTAAAAATGATTCACAGTATGAGGTTGTGTTGAGATTCTATGCAGACACTTCAAAATCTGTGTTCAGGCTCATGTATGATTCTGATTCTAGCTCAGCCAAGGATCTGGACACAAGATATAGCACTATTACTTTGTCAGACCCTCCATTCAGATTCCCATTAACCCGGTGGAGTAACACGTGGGTCGTATTCTGTTTCCCATGGGGCAAATCACCAGTAATTCCTATCATCAAATTGAACTGAAGACCTCAGAAGCTGATCCAGTGTTAGTGTTGTGCACATTTGAATAGTTAAAGGTGATCCCAGAGCTGCACTGCCATCCTATTGATTATTTCATGATCCACAAGTCATATTGATTGTGTTCTGTCAATGTTAGACAGGTTTTGTCAGAGTAAATGGTTATAATTAAACCCCATCAATAAGATTTAACGATCTGAAAATCTGCACAGAACACCTACAATGCAGGCAGCCTGAAACGTGTGGGTGTTGAGGTCTTCAGCCACTCACACTCTAAAATCTTCAGTTAAAACGCAGCTTCTGGTCACGTCATATTGTTGAGTTAAAGGATCAGTGTTGCCAGGTTAAATATATGCAATATGTGTAAACTCTTTGCTGTAAACTATTACAGTAATATTGGAAAGGGGCACAATATTAACATGCTTTTTGGATGGTGATTTTCTCGTCAAATTCAATTCCAGTATGTATTTTCTGTCAATCTTATGCCCACACTTCTACCTCTACACTCACTGTTGCGTTGTTGCTTTTCTCAATGATTTATGCCCTCTTTTTCACAACCACAAACCAAAATGTCTCTATGCATGTGTATGGCACTGCTTTATAAAGTTTTAGCACTGCCTAAGctttatagttttgatgtataTTAATCGTGGGTTGACTGCTATAGTATGGTATTAATTAGGATAATTGTTTTCTGCAATATGTCTATTGGAGATTCCACATTAATATATTTAATCAGCATTGTTATCTTTCTCATCTTTGAGTTGTAGTTACTATATTGTTTGAGACACTTATTCAAAGGGCTATTATATTTTATTTGATAAATGTCTTTCATATTCTATTTGATTTCTTGTTTtcctaaaaatgtatatttttccaATGGAATATGCCAAAAATATGAGCTTTAATGTCCATTACTACTTAACATTTTTAAAGAATAagatatttcaattttattttgcACATAATTATGTACACAAATACTTGTATACTTACCTTTGTAGATACAGTATAAATACTCAGATGCATATTTTAGTATTGGAGGGGAGAAATGGGTTAATGCCAAATGGCTGATTTCTGTCGACTGTGTCATACATCTGAATTTTTTTGTTTACTTTCCTGATTTTAAAGATTAGGTTATTGATTCTTTATAGTAATCAGAATGTACCACTTGTATAGCCTACATGATTCATTGACAGAACTGTACTTTGAAGGAAACAACTTGTTCTGATCATGTCCATCCAAATTCTGAAGGAACTGTGAAACACAATAACACATTCAAATGCAAATTAGAGGTGAATTACTTTATTTTTCATTCAAGTGCTTGTCTTGTTTTATCTTTCACTTTAAGTATGTAAAGAAGTTGGCATTTATGTTATTCTGTATCTTGTTTTTTTCCGGTATCTGGTATTGAAACGTTTGAATGCTGAATGGCTTTCCAAGACATTGATTTGACCACTCAACACAATGACAGCAAAGACTTGTAATCTCCCTCACATAATATTAAAATCATTGGTTTGCAGTTATATTTCAACTCATTGGAGGTCATACATgaaacaaaaaaaatgctttaaATAAACATCAGTTACTATCGC

Function

NR:

description
E3 ubiquitin-protein ligase RNF169

GO: NA

KEGG:

id description
K20805 RNF169; E3 ubiquitin-protein ligase RNF169

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587190.2 True 4504 mRNA 0.40 7 787157 799246

Neighbor

gene id symbol gene type direction distance location
LOC110507298 spcs2 coding downstream 10979 769005 ~ 776178 (-)
LOC110507297 LOC106580671 coding downstream 55572 695191 ~ 731585 (-)
LOC118944766 NA coding downstream 264012 521319 ~ 523145 (-)
LOC110507295 LOC106580669 coding downstream 291321 487222 ~ 495836 (-)
LOC110507294 LOC106580668 coding downstream 316584 456052 ~ 470573 (-)
defb4 NA coding upstream 16252 814467 ~ 816586 (-)
col4a4 LOC106579782 coding upstream 62252 861498 ~ 1020971 (-)
ostn ostn coding upstream 393031 1192277 ~ 1232835 (-)
LOC110507040 il-1racp coding upstream 521730 1320976 ~ 1343406 (-)
LOC110507309 fgf12 coding upstream 608941 1408187 ~ 1547213 (-)
G2039458 NA non-coding downstream 9164 777776 ~ 777993 (-)
G2039032 NA non-coding downstream 174990 611818 ~ 612167 (-)
G2038909 LOC106580667 non-coding downstream 360513 423047 ~ 426644 (-)
G2038809 NA non-coding downstream 575846 210587 ~ 211311 (-)
G2038808 NA non-coding downstream 576580 210106 ~ 210577 (-)
G2039501 rhbdd1 non-coding upstream 49706 848952 ~ 861381 (-)
G2039625 NA non-coding upstream 262573 1061819 ~ 1093191 (-)
G2039669 NA non-coding upstream 303854 1103100 ~ 1103454 (-)
G2039670 NA non-coding upstream 304422 1103668 ~ 1103883 (-)
G2041883 NA other upstream 2096330 2895576 ~ 2896391 (-)
G2041885 NA other upstream 2099741 2898987 ~ 2899388 (-)
G2042608 NA other upstream 2601333 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 2739938 3539029 ~ 3718487 (-)
G2043460 NA other upstream 3544353 4343599 ~ 4348409 (-)

Expression


Co-expression Network