defb4


Basic Information

Item Value
gene id defb4
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 814467 ~ 816586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001195169.1
ATTGCAACTCTTCTAAAGAACAGTCAACATCAGCAAATCATCATGAAATATCACTGCACGATGCTCTTGGTGCTCCTCGCTTTCTTGGCCATCGCATGTGATGTAAATGAAGCAGCTGCATTTCCAATTCCATGGGGATGCTCAAACTACAGCGGGGTCTGccgtgctgtctgtctgtcagcagaACTACCATTTGGACCTTTTGGATGTGCTAAAGGATTTGTatGCTGTGTCGCCCACGTCTTCTAAATCTCTTCAGTGTTTGTCCTGCGCCTAAACTTCCAGCTAAATCAATGCAACAGTTACTTTTCTATGCACTTTGGCATTTATCCTCTTGCAATTGAAGATAATGATTATAAGACCTGCATTCACAGATACTCCCTTGGTCTGCATTGATGTTCCTCCAACTTTTCTTCAATACCAACTACTCTGACATGATTATCACACACATGTTAAGAAATTAAATGGTTTGATATTTTAAAACACTACTTCAGAATAAAATGAGAATGGAAAATA
>TU2333196
ATTTGAAGCACAAGCTCTGACTCATGACTACTAGTCTTATTAGGTTAACTGGGACTGATTGCAAAGAATAGACAAATCCTGAGAGAAACTGTCACATTGCAACTCTTCTAAAGAACAGTCAACATCAGCAAATCATCATGAAATATCACTGCACGATGCTCTTGGTGCTCCTCGCTTTCTTGGCCATCGCATGTGATGTAAATGAAGCAGCTGCATTTCCAATTCCATGGGGATGCTCAAACTACAGCGGGGTCTGccgtgctgtctgtctgtcagcagaACTACCATTTGGACCTTTTGGATGTGCTAAAGGATTTGTatGCTGTGTCGCCCACGTCTTCTAAATCTCTTCAGTGTTTGTCCTGCGCCTAAACTTCCAGCTAAATCAATGCAACAGTTACTTTTCTATGCACTTTGGCATTTATCCTCTTGCAATTGAAGATAATGATTATAAGACCTGCATTCACAGATACTCCCTTGGTCTGCATTGATGTTCCTCCAACTTTTCTTCAATACCAACTACTCTGACATGATTATCACACACATGTTAAGAAATTAAATGGTTTGATATTTTAAAACACTACTTCAGAATAAAATGAGAATGGAAAATATAACATTGCTGTTGAGTAATACTGGCTATGATGTAGTTGTGCAGTGTAGAGAGCAACTTGAGCTAAGCCTGAAGCTGAGGCAACAATGCAATCCGATctctaaagccttgttcacattggcagtttgaagtgactcaaatcctATTTATTTGTATATCTGATTTGAATCTGTtttttttcctgcagtctgaacagccaaaaagaACATGGAATCAGACACCTTTGAAGGTGGTTTGAAGTCcgatacaaatctgattcctggccatgtgacttgtgtctgaatggtcaaatctgatttatttgcccTCAAGTGGTTTTTAGACTGTTATTCAGCGTATCTTGTTGTTGCTAGCTACGCTGTTGAaagtttgacaagaacatgtggtagctaactagcatgttaattgtttacaaacaaatgaatgaatgtgctagaaagctaaacagctgcctagctagctagttgacctCTGTGGCCAGGGCTCTCGACTTTTTCCACTCACCCTCCCGGTACTGTCCCGAAGTGTAATTTTAACATTCCAAAACTGAACCATCCCAAAATtaaaatacttaaaaaaaatgttttgatatGCCAACATGGGTCTAGGTCATTCGCAGTGCTTTTAAAGTAAGTGGTGTATTTCTGAGACAGATAAAGTCTCTATTGCATACACTTAATttgttagtttaaaaaaaaaagcatctTAATGAAAACAGACATTATTAataataatgtactgtattaatTTAACATGTTAACCCCATGTATACAATATATCTAAGAGAGAACAATGGTATTTCAAATTGGTTACTGAATAAACATTAGTTAGACATTTACAGTCCAGCACCAGCTGCCCCATGAAACATAACACAACAATATACAATaaagaacgtgtgtgtgtgtgttccccagcCTTCACCGTCTCTGCTTCACCCTCCCTCTTCAGTCACTGAAGAATGGTCGCCATGACCTTTTTGAGCGCCACAACTTGCTAACGGCCAGGGCCAAAGTTTCTCTTTTtggaacataa

Function

NR:

description
beta-defensin 4 precursor

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001195169.1 False 516 mRNA 0.40 3 815498 816491
TU2333196 True 1642 lncRNA 0.39 3 814467 816586

Neighbor

gene id symbol gene type direction distance location
LOC110507299 LOC106580672 coding downstream 16252 787157 ~ 799246 (-)
LOC110507298 spcs2 coding downstream 39320 769005 ~ 776178 (-)
LOC110507297 LOC106580671 coding downstream 83913 695191 ~ 731585 (-)
LOC118944766 NA coding downstream 292353 521319 ~ 523145 (-)
LOC110507295 LOC106580669 coding downstream 319662 487222 ~ 495836 (-)
col4a4 LOC106579782 coding upstream 45007 861498 ~ 1020971 (-)
ostn ostn coding upstream 375786 1192277 ~ 1232835 (-)
LOC110507040 il-1racp coding upstream 504485 1320976 ~ 1343406 (-)
LOC110507309 fgf12 coding upstream 591696 1408187 ~ 1547213 (-)
LOC110507311 mb21d2 coding upstream 741447 1557938 ~ 1580617 (-)
G2039458 NA non-coding downstream 37505 777776 ~ 777993 (-)
G2039032 NA non-coding downstream 203331 611818 ~ 612167 (-)
G2038909 LOC106580667 non-coding downstream 388854 423047 ~ 426644 (-)
G2038809 NA non-coding downstream 604187 210587 ~ 211311 (-)
G2038808 NA non-coding downstream 604921 210106 ~ 210577 (-)
G2039501 rhbdd1 non-coding upstream 32461 848952 ~ 861381 (-)
G2039625 NA non-coding upstream 245328 1061819 ~ 1093191 (-)
G2039669 NA non-coding upstream 286609 1103100 ~ 1103454 (-)
G2039670 NA non-coding upstream 287177 1103668 ~ 1103883 (-)
G2039676 NA non-coding upstream 294806 1111297 ~ 1111564 (-)
G2041883 NA other upstream 2079085 2895576 ~ 2896391 (-)
G2041885 NA other upstream 2082496 2898987 ~ 2899388 (-)
G2042608 NA other upstream 2584088 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 2722693 3539029 ~ 3718487 (-)
G2043460 NA other upstream 3527108 4343599 ~ 4348409 (-)

Expression


Co-expression Network