LOC110507040 (il-1racp)


Basic Information

Item Value
gene id LOC110507040
gene name il-1racp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1320976 ~ 1343406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110507040
ATGGAGTCAGGCGATGGAGCGGTGTGGGTGATGGAGGGGGAGAAAGGCTGGCTGCCCTGCCCTCTCTTCTCCCACCCCACTGTCTACAACTATAGCTCGGCCCAGGCAGCAGGCCTCAACCTGGTGTGGTACCACGTGGCTGCAGGTCAGGACCTGGAACAACCCATCGACTTCCACCACCCCGACCAGAGGCTcagcaaggagagggagagtcTGTGGCTGCAGTCAACCACCACGCAGGACACCAGCCAGTACATCTGCATGCTGAGAAACAAGACATTGTTTGCCAAGATTGCTGTGCGTTTGGAGGTGGTGCCACATGGCCAGGACCCTAACTGTGAGGTGAAGGCTGCCGTGCCTTCCACCCTTGTAATCGCGCCCCTACAGGAGAGCAGTACCCTAACCTGCCCTGACCTGGAGGACATCATGCTCCCTAATGCTAGCCACTCTGTCACCTGGTACCATGTAAGTGTAAACGCCTTCGGGAACATTGATCGTGTGCCCAAAAGAGACAAGCTGGTCATCAATGTAATGTAATGGAGCACTACCAAGGACTGTACCACTGTGTGGTCACTTACGAGACCAAAGGAAGAGCCATCAACTTCACCAGAGGGGTCAATGTAACCGCAGTGTCTTCCAGTGGTTTACCCAAAAATACCATTATACTCAACCCTGCCAAGGAGCAACTCTATCCTGTCAAACATGggtcagaggtgaatctcACATGCACAGTGTTGTTGCCCTACCTAGAAGGACCTAGGAAGACCTGGTGGACCATTGATGGGAAGACTGTAGAGCAGCTAGCTGATCGCCGCATCTCAAACACTTCTAGGTAAGTCTCATCCTCTTTTGTCTTTTCTTGACTCTTctcttctgttactgtctcttctcatctctattcttctctactcttctatattgttatttttgtttgtttctatcctctcctctcattcttctGTCACTCCAATTTATTGGACCTAACCAGAGAATACAACTGCTCCGGATGCAACCACCGAGGCGTGGCCACCCGCAGGGCAGTGCTagaagaggaggTGTACCTGCCATCGGTGAAGCTGGGCTGTGGCCTGTGCGTGACTCTGTTCCTGATGCTGATGCTGTTCGTGGTCTACCACATCTTCTGGCTGGAGCTGCTGCTGCTCTATCGCTCTTGGTTCGGAACCGACGAACAATGTACAGTCGACAAGGAGTACGACATCTACATCTCGTATGCGAGGAGGAGCAATTTGTCCTCTTGACACTGCATAGGGTCCTGGAGAATGAGCTGGGCTATACTGTCGGCATATTCGACAGGGACAGCCTtcctggagggaCCATCACAGACGAGATGCTGACCTTTGTGGGCCGCAGTCGCCGCCTCTTGGTGGTTCTCAGCCCAGGATACGGTCGCTAGGGGACCCAGGCCCTGCTGGAGCTCAAGGCAGGGCTTGACAGCATGGCGGTGGGTGGGCGTCTACGGGTCATCCCCGCTGGTACATTGGAAAGGGGACAAATCCAGTGATCTGGATTCTGGAAGGTTCTGGAAGCGACTGCGTGTGGAGCTGCCTGTCAGAAGGATAAAAGACTCGCTACAGAGCCAAGATATGTACCTGCCATCGGTGAAGCTGGGCTGTGGCCTGTGCGTGACTCTGTTCCTGATGCTGATGCTGTTCGTGGTCTACCACATCTTCTGGCTGGAGCTGCTGCTGCTCTATCGCTCTTGGTTCGGAACCGACGAACAATGTACAGTTGACAAGGAGTACGACATCTACATCTCGTATGCGAGGAGGAGCAATTTGTCCTCTTGACACTGCATAGGGTCCTGGAGAATGAGCTGGGCTATACTGTCGGCATATTCGACAGGGACAGCCTtcctggagggaATGTGTCGGAGGCTGTCCTCAGGTGTATACAGTCAAGCTGATGGCTCCTGGTGGTCCTTAGCCCTGACTATCTGACAGAGAAGAGCATCAGCCTGCTGGAGTGTCACCTGGGCTTCTACATCCAGCTCACCAGCCACGCCTGCATCATCACCGTCCTTTACAGCCCCCTCCCGGTAGTCTCCTGCCGGGCCTCCTGCACTGAGGCCCAGCAGCTACGCCGcagcaccaccaccatcacctggAGGGGACGATGGAGTTGGAGCCGCCCACCTCTTGCTTTTGGAAGCGCCTGA

Function

NR:

description
interleukin 1 receptor accessory protein precursor

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110507040 True 2176 mRNA 0.54 12 1320976 1343406

Neighbor

gene id symbol gene type direction distance location
ostn ostn coding downstream 88141 1192277 ~ 1232835 (-)
col4a4 LOC106579782 coding downstream 300005 861498 ~ 1020971 (-)
defb4 NA coding downstream 504485 814467 ~ 816586 (-)
LOC110507299 LOC106580672 coding downstream 521730 787157 ~ 799246 (-)
LOC110507298 spcs2 coding downstream 544798 769005 ~ 776178 (-)
LOC110507309 fgf12 coding upstream 64781 1408187 ~ 1547213 (-)
LOC110507311 mb21d2 coding upstream 214532 1557938 ~ 1580617 (-)
LOC110507317 LOC106580633 coding upstream 505369 1848775 ~ 1875484 (-)
zgc:162872 LOC106580634 coding upstream 534262 1877668 ~ 1890486 (-)
trmt9b LOC106580636 coding upstream 562932 1906338 ~ 1933706 (-)
G2039692 NA non-coding downstream 189808 1130908 ~ 1131168 (-)
G2039690 NA non-coding downstream 191530 1127754 ~ 1129446 (-)
G2039683 NA non-coding downstream 199115 1121651 ~ 1121861 (-)
G2039676 NA non-coding downstream 209412 1111297 ~ 1111564 (-)
G2039670 NA non-coding downstream 217093 1103668 ~ 1103883 (-)
G2039959 NA non-coding upstream 316 1343722 ~ 1343988 (-)
G2040002 NA non-coding upstream 6378 1349784 ~ 1395586 (-)
G2040047 NA non-coding upstream 60016 1403422 ~ 1403907 (-)
G2040983 NA non-coding upstream 92916 1436322 ~ 1439271 (-)
G2041883 NA other upstream 1552170 2895576 ~ 2896391 (-)
G2041885 NA other upstream 1555581 2898987 ~ 2899388 (-)
G2042608 NA other upstream 2057173 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 2195778 3539029 ~ 3718487 (-)
G2043460 NA other upstream 3000193 4343599 ~ 4348409 (-)

Expression


Co-expression Network