trmt9b (LOC106580636)


Basic Information

Item Value
gene id trmt9b
gene name LOC106580636
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1906338 ~ 1933706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587237.2
TTTAATTATTTTTCATTCTAGCTAACCATAACCATTTTCATAACCTTAATCTAATTCTCCTGACCTGCTACATCAATTCGCTTTACCTGCAGCgtaaattatcctaacctgccacggaAAGTCAATTCTGACATAAACTGTATCCCATCTAGTCAAAATAGGACTGAATCAGAACGCCAATTTCACTCAACCTTTATCAACGCTGACAACCGATTTGAACATATTTCATCCGTTGCTGACATGTAGCCGACACGATAAATTGGCCGGCAGAAGTATTTACGCTGTGCGGCTGAGGTGGGCTGGTTTTATGAGCGAGCCTGGATGACCGTGATGGAGGAGGCTGCCACTCGGCTGGAGAGGGAGCATGTGCACAGCGTCTACGAGAAGATTGCTCCTTATTTTAACGACAGCCGCTACAAGGCCTGGCCCAAGGTGCGCCAGTTCCTACTGGACCATGAGCCTGGCAGTATCATCGCTGACGTGGGCTGTGGCAATGGCAAGTACCTGCACATCAACGGCAGTGTGTTCAAGCTGGGCTGTGACGTGTGTCGCCCCCTGGTGGACTCTGCCTGGAGCCAGGGCCACGAGGTGCAGCTGTGTGACAGCCTCAGGCTGCCCTACAGGGATAGCTGCTTTGACGGTGTCCTCTCTATCGCAGTCATCCATCATCTGTCCACCAAAGAGCGTCGTATTCGAGCAATAAAGGAAATGGCAAGGACCCTGCGCGTGGGCGGGCGCATCATGATCTACGTGTGGGCCATGGAGCAGACACGGCGGAAGTTTCAGAAGCAGGACATCTTTGTGCCCTGGAACCCCAACCCCCCGTCCCCCACCCTGGGCAGGGAGCGGCCCACACCCAGGAGGAGGGGCGCTGTACAGAGCATGAGCGAATGCCTCTACAGCGACAAGAACAGGAAGGTGAAAAGCACATCGTCCATGCTGGACAAAGAGGAAATGACCTGCAGTCCCCATCAGAGCCACAGGCTCTGGTTCTTCTCACGCTCCCTGGACTCGGTCTTTGACTTTGGCAGCCTGACCATCTCCAGATCCACCTCCAGGGAACTCATCAGCACCGTCTCCTCCCGGCTTGGGGAGGCGGAGGGGGGAAAGGTCGGCCGCAGAGGCAGGGGAGCGGGCCTCATCAAGCAGCTGTCCAGCCTCTTTTCTGGCTTCTCCAGGAACAACTCGGAGGAAGATGTCTTTGACTCGGTCACAGACTTAGCCAGGAGCCAGAGACATCATGGCAACGACAACCACTCCAACTCCACAGAGAAGACCAGTGTCCCTACTGCCTTGGTCCAGGAGTGTGGCTCTGTGGCCCTGCCTGACCTGGTCTCCTCCTACCAGAGGGAGCACACAGAGGGACCAGGGGAGAGGGAAGCAGGCCCACCAGGAGACCTCAAACAGGACAGTGAAGGGGAGCCGGAGGCCACCTCGTGTCTGCGCTATTACCACGTGTTCCGGGAGGGCGAGCTGGCGGAGCTGATCGAGAGCCACGTCCAAGAGCTCCACGTCCTTTACTCCTGCTTCGACCACGCCAACTGGTGCGTGGTGGCCGAGAAGGTCCAGGTTTGGAACATATGACTTGGTTTTAACAAGTTTGATTTAATTTTTTATCATGATTTATTCATCTTGCGCCTCAAAGACAAAAAGTACACTATTTTTTAAGAGATGTTGAAGGTACTGTTCAAATTCTTGAGGTGTTGTTTTAAGAGGTAGTGTTTTGCAAATGGAAGGCACCCAATAAGCAGTGTCCAGAGACCCAGGGCCACGGTATATAtgggtctgcgtcccaaatggcaccctattcccaagaCTTCTATCCTCCGTTCCAATGCTGCTATCAATGGACCACCAATAACTATGAAAAATGTCTGCCAAGGAATCAAGTCATTTAAGTTTTCCCTCTCTAAATTTTGCTCTTCTGTTTTTAGCCATAGAGGAACTTAtaggacacccccccccccccttccatttGCCTCTTAGACTAACTATTGACCATTACGTTATATAGTGGTGGAATGGGTCTCTCAAATGCTAATTCTGCCTGTATTTGTCTTCATATGTTCCGCAAAATACAAGAGGAACCAACCTTGCAGCAACGTTCTGTGACGTGTTGGTATCCCTTTCTGTGGACCACCTGTGTATAATGGGTCGCGTTCTAAGGAGCCATGTGCTGTTATTTAAGAATGCTTAATTAAGTCAAGTGCTGTAATgtcaatgctgtctgtgtgatttGGTGTTAACATGTTGTCCAGCTGAACTAAACCAATATAACTTTTGGGGCAAATTATCAGACATATGTCCTAGATGATACTGTGAAATGTTGCACTGTAGGTCTGTTGCTGCTTGCTGAATGTCCGTGGTTCGCATATTAATAGCTCCCGGAAAACGTGAAACATTTCTGTAGTCATTGAGCCGTGGTAGTTGCATAAGCCTGTCAGTCCAGTGCAGCATGTCTAGACTCACTACTATGATACTGGTGTACAGATTTTATGGTTGATTTTTAAAAATTACAATTTTTAAATAGAATTTGTCTGTGTATGTTTTTAGCCCATTAATAAATAATTAGTATGAATCTC
>TU2334931
CAGAACGCCAATTTCACTCAACCTTTATCAACGCCAAGTCATTTAAGTTTTCCCTCTCTAAATTTTGCTCTTCTGTTTTTAGCCATAGAGGAACTTAtaggacacccccccccccccttccatttGCCTCTTAGACTAACTATTGACCATTACGTTATATAGTGGTGGAATGGGTCTCTCAAATGCTAATTCTGCCTGTATTTGTCTTCATATGTTCCGCAAAATACAAGAGGAACCAACCTTGCAGCAACGTTCTGTGACGTGTTGGTATCCCTTTCTGTGGACCACCTGTGTATAATGGGTCGCGTTCTAAGGAGCCATGTGCTGTTATTTAAGAATGCTTAATTAAGTCAAGTGCTGTAATgtcaatgctgtctgtgtgatttGGTGTTAACATGTTGTCCAGCTGAACTAAACCAATATAACTTTTGGGGCAAATTATCAGACATATGTCCTAGATGATACTGTGAAATGTTGCACTGTAGGTCTGTTGCTGCTTGCTGAATGTCCGTGGTTCGCATATTAATAGCTCCCGGAAAACGTGAAACATTTCTGTAGTCATTGAGCCGTGGTAGTTGCATAAGCCTGTCAGTCCAGTGCAGCATGTCTAGACTCACTACTATGATACTGGTGTACAGATTTTATGGTTGATTTTTAAAAATTACAATTTTTAAATAGAATTTGTCTGTGTATGTTTTTAG

Function

NR:

description
PREDICTED: putative methyltransferase KIAA1456 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587237.2 False 2582 mRNA 0.49 5 1906338 1933706
TU2334931 True 701 lncRNA 0.40 2 1906367 1933537

Neighbor

gene id symbol gene type direction distance location
zgc:162872 LOC106580634 coding downstream 15852 1877668 ~ 1890486 (-)
LOC110507317 LOC106580633 coding downstream 30854 1848775 ~ 1875484 (-)
LOC110507311 mb21d2 coding downstream 325721 1557938 ~ 1580617 (-)
LOC110507309 fgf12 coding downstream 359125 1408187 ~ 1547213 (-)
LOC110507040 il-1racp coding downstream 562932 1320976 ~ 1343406 (-)
n4bp2l2 LOC106580637 coding upstream 4121 1937827 ~ 1966651 (-)
LOC110507323 NA coding upstream 43376 1977082 ~ 2171787 (-)
LOC110507325 LOC106612440 coding upstream 292005 2225711 ~ 2406218 (-)
wdr95 LOC106580697 coding upstream 499054 2432760 ~ 2465478 (-)
LOC110507328 LOC106580643 coding upstream 585007 2518713 ~ 2542284 (-)
G2041258 NA non-coding downstream 4550 1901568 ~ 1901788 (-)
G2041256 NA non-coding downstream 6127 1900001 ~ 1900211 (-)
G2041172 NA non-coding downstream 105437 1743123 ~ 1800901 (-)
G2041184 NA non-coding downstream 133292 1770517 ~ 1773046 (-)
G2041498 NA non-coding upstream 348134 2281840 ~ 2297659 (-)
G2041613 NA non-coding upstream 546940 2480646 ~ 2495700 (-)
G2041626 LOC106612439 non-coding upstream 562794 2496500 ~ 2498329 (-)
G2041710 NA non-coding upstream 694341 2628047 ~ 2628375 (-)
LOC110507298 spcs2 other downstream 1135601 769005 ~ 776178 (-)
G2041883 NA other upstream 961870 2895576 ~ 2896391 (-)
G2041885 NA other upstream 965281 2898987 ~ 2899388 (-)
G2042608 NA other upstream 1466873 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 1605478 3539029 ~ 3718487 (-)
G2043460 NA other upstream 2409893 4343599 ~ 4348409 (-)

Expression


Co-expression Network