LOC110507325 (LOC106612440)


Basic Information

Item Value
gene id LOC110507325
gene name LOC106612440
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2225711 ~ 2406218 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587245.2
ACGCCAAAATCTCCTTTCTCTTGTCCTAAAAATTGTGCACAAAAAAAGCATTCCATTCCAAACACTGTCAAAGCCACACCGGAGgctgtcagcatctctctctgtctcgcacgATGATCCCTGAAAAGCCAGATGTCGTACACACCGTTgctttttatttactttttctgTCGTTCGTTCCTGCCAACATTGCCACCAGCAGCTCAAGACAGaacCTAGATGCAAATGAAGTCCTCTATGACAGCCAACCTGACCTGCGAGAGATAGTGTTTGTGATCCAGAGCCAGAGTAACTCATTCCATGTGAGTcgggcggagagacagagagcagacctgTTACAACAGACTCAGAGCCTCACACAGACACCCCCTCCGGTCCTGCTCCTCCACAGTCTGACAGACAATGAGGGAGACTGGAGCATCCTTCCTGTGCTGCCTTATTTATCCTTGTTGTTTGGGAAGAACTCATCCTGGTTGGTGTTTCTGGAAGAGGAGACTAACGTCAAGGTGACCAAACTGCTCCAGGCCCTCAGGAAGTTTGACAGGAGAAAAGAGTGGTTCCTGGGTAAACCTCTTCATGATGAGGAGTCGACCATCATCCACCACTACGCCTTTGCAGAGAACCCCTCCATCTTTAAATACCCAGACTTCTCTGCTGCCTGGGCCCTTAGCATCCCCCTGCTTGACAGgCTCGCAAGCAAAGTGAGAGATGACCCACTCAAGTCTGACTTCACTATCGATCTGAAGCATGAGGTAGCTCTGTATATCTGGGAGAATGGCCAAGGGCCTCGTCTGACGGCAGTCCCAGAGCTGTGTACTGAGCCAGAACACTCTCCCACTGCCCAACACTGTGCTACCACCCTCAGCAGTCCTGCTCCCCTGTGTgggGAGCCTGTAAAGAAGGAAGACATCTTTGTCGCTGTGAAAACTTGTAAGAAGTTTCACACTGAGAGGGTCCCAGTGGTGAAGAAGacgtgggagagagaggcatttcTGTTGGAGTATTACAGTGACCACACTGACCCTTCCATACCTACCATCGACCTAGGAGTccccaacacagagagagGTCATTGTGGGAAGACGTTTGCCATCTTAGAGAGGTATGTCAGCGATGCAGTGCCAAAGACGAGATGGCTTCTGGTGGTGGATGATGACACACTCATCAGCCTGCCCAGACTGCAGATGCTGCTGAGCTGTTATGACCCCTCTGAACCGGTGTGTCTAGGGGAGAGGTACGGCTACGGGCTCGGCCAGGGAGGCTACAGCTACATCACCGGAGGAGGGGGGATGGTGTTCAGTAGGGCCGCGGTGGTGAGGCTCCTGGCCAGTGACTGCAAGTGTTACAGTGATGACGCCCCTGATGACATGGTGCTGGGGATGTGTCTCAACGCTCTGGGGCTTCCTGTCACACATAGCTCCCTCTTCCACCAGGCTCGACCTGAAGACTACTCCAGAGACTTCCTAGCCCACCAGGTGCCCATCTCCTTCCACAAACACTGGAACATCGACCCCGTCGCCGTCTTCAACAGGTGGCTAAAGGACGAGTCGAGGTCAACAAGCCCACGTGGACTAAACAAGAGCACCAAGGAAGAGTTATAGTCACTCAGACACGAtcagtcttgtgtgtgtgtgtgtggagtcatgGACAAACAAATTGTCTGCATGTTTCCTCCGTCGGTGTAAACGTTTTCTATATTGTGAATCTTGCGTAGATATAATTTGGAGGGTTCATGCAAGTCTCTGTCCATGACTGTGTGTTTGGGAACTTATTCATGACGGAGGCCAGGCACGGTAGAACAGCCCACTACTATGGACTTTCAAAGGTAATTTACGCTTGGGCCAACATGCTCAACATTTACCATGAATGCGATCTCCGCGAACTTCGGGGAAAACGCCTTTAGAAGACACATTGTCGGCTGTCTAGCGCGCAGTATTGTATTGAATCCCGGCCACAGTTTCAATAGATTTGCATGTTGAGGTTGTCAGTGTGTTGTCAGGCTCTTGTCTGtgtatatttataatatataatCAATTTCTTGCCAAATTGAACAATGAAACTCATTTTTTTTCTTAAGGACATATATCAACATTATTGCTACATGCTGTACAATGTGTACTATTTTTATAAAAACGTATTTGCGGTGTC
>XM_036965104.1
CACGCCAAAATCTCCTTTCTCTTGTCCTAAAAATTGTGCACAAAAAAAGCATTCCATTCCAAACACTGTCAAAGCCACACCGGAGgctgtcagcatctctctctgtctcgcacgATGATCCCTGAAAAGCCAGATGTCGTACACACCGTTgctttttatttactttttctgTCGTTCGTTCCTGCCAACATTGCCACCAGCAGCTCAAGACAGaacCTAGATGCAAATGAAGTCCTCTATGACAGCCAACCTGACCTGCGAGAGATAGTGTTTGTGATCCAGAGCCAGAGTAACTCATTCCATGTGAGTcgggcggagagacagagagcagacctgTTACAACAGACTCAGAGCCTCACACAGACACCCCCTCCGGTCCTGCTCCTCCACAGTCTGACAGACAATGAGGGAGACTGGAGCATCCTTCCTGTGCTGCCTTATTTATCCTTGTTGTTTGGGAAGAACTCATCCTGGTTGGTGTTTCTGGAAGAGGAGACTAACGTCAAGGTGACCAAACTGCTCCAGGCCCTCAGGAAGTTTGACAGGAGAAAAGAGTGGTTCCTGGGTAAACCTCTTCATGATGAGGAGTCGACCATCATCCACCACTACGCCTTTGCAGAGAACCCCTCCATCTTTAAATACCCAGACTTCTCTGCTGCCTGGGCCCTTAGCATCCCCCTGCTTGACAGgCTCGCAAGCAAAGTGAGAGATGACCCACTCAAGTCTGACTTCACTATCGATCTGAAGCATGAGgggGAGCCTGTAAAGAAGGAAGACATCTTTGTCGCTGTGAAAACTTGTAAGAAGTTTCACACTGAGAGGGTCCCAGTGGTGAAGAAGacgtgggagagagaggcatttcTGTTGGAGTATTACAGTGACCACACTGACCCTTCCATACCTACCATCGACCTAGGAGTccccaacacagagagagGTCATTGTGGGAAGACGTTTGCCATCTTAGAGAGGTATGTCAGCGATGCAGTGCCAAAGACGAGATGGCTTCTGGTGGTGGATGATGACACACTCATCAGCCTGCCCAGACTGCAGATGCTGCTGAGCTGTTATGACCCCTCTGAACCGGTGTGTCTAGGGGAGAGGTACGGCTACGGGCTCGGCCAGGGAGGCTACAGCTACATCACCGGAGGAGGGGGGATGGTGTTCAGTAGGGCCGCGGTGGTGAGGCTCCTGGCCAGTGACTGCAAGTGTTACAGTGATGACGCCCCTGATGACATGGTGCTGGGGATGTGTCTCAACGCTCTGGGGCTTCCTGTCACACATAGCTCCCTCTTCCACCAGGCTCGACCTGAAGACTACTCCAGAGACTTCCTAGCCCACCAGGTGCCCATCTCCTTCCACAAACACTGGAACATCGACCCCGTCGCCGTCTTCAACAGGTGGCTAAAGGACGAGTCGAGGTCAACAAGCCCACGTGGACTAAACAAGAGCACCAAGGAAGAGTTATAGTCACTCAGACACGAtcagtcttgtgtgtgtgtgtgtggagtcatgGACAAACAAATTGTCTGCATGTTTCCTCCGTCGGTGTAAACGTTTTCTATATTGTGAATCTTGCGTAGATATAATTTGGAGGGTTCATGCAAGTCTCTGTCCATGACTGTGTGTTTGGGAACTTATTCATGACGGAGGCCAGGCACGGTAGAACAGCCCACTACTATGGACTTTCAAAGGTAATTTACGCTTGGGCCAACATGCTCAACATTTACCATGAATGCGATCTCCGCGAACTTCGGGGAAAACGCCTTTAGAAGACACATTGTCGGCTGTCTAGCGCGCAGTATTGTATTGAATCCCGGCCACAGTTTCAATAGATTTGCATGTTGAGGTTGTCAGTGTGTTGTCAGGCTCTTGTCTGtgtatatttataatatataatCAATTTCTTGCCAAATTGAACAATGAAACTCATTTTTTTTCTTAAGGACATATATCAACATTATTGCTACATGCTGTACAATGTGTACTATTTTTATAAAAACGTATTTGCGGTGTC

Function

NR:

description
beta-1,3-glucosyltransferase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587245.2 False 2148 mRNA 0.50 15 2225711 2406217
XM_036965104.1 True 2017 mRNA 0.49 14 2225711 2406218

Neighbor

gene id symbol gene type direction distance location
LOC110507323 NA coding downstream 53924 1977082 ~ 2171787 (-)
n4bp2l2 LOC106580637 coding downstream 259060 1937827 ~ 1966651 (-)
trmt9b LOC106580636 coding downstream 292005 1906338 ~ 1933706 (-)
zgc:162872 LOC106580634 coding downstream 335225 1877668 ~ 1890486 (-)
LOC110507317 LOC106580633 coding downstream 350227 1848775 ~ 1875484 (-)
wdr95 LOC106580697 coding upstream 26542 2432760 ~ 2465478 (-)
LOC110507328 LOC106580643 coding upstream 112495 2518713 ~ 2542284 (-)
LOC110507043 LOC106603827 coding upstream 530310 2936528 ~ 2940847 (-)
LOC110507338 LOC106603753 coding upstream 539704 2945922 ~ 2956588 (-)
LOC118944748 NA coding upstream 550422 2956640 ~ 2961498 (-)
G2041258 NA non-coding downstream 323923 1901568 ~ 1901788 (-)
G2041256 NA non-coding downstream 325500 1900001 ~ 1900211 (-)
G2041184 NA non-coding downstream 452665 1770517 ~ 1773046 (-)
G2041613 NA non-coding upstream 74428 2480646 ~ 2495700 (-)
G2041626 LOC106612439 non-coding upstream 90282 2496500 ~ 2498329 (-)
G2041710 NA non-coding upstream 221829 2628047 ~ 2628375 (-)
G2041725 LOC106584099 non-coding upstream 243276 2649494 ~ 2655785 (-)
G2041724 LOC106612432 non-coding upstream 264085 2670303 ~ 2685780 (-)
LOC110507298 spcs2 other downstream 1454974 769005 ~ 776178 (-)
G2041883 NA other upstream 489358 2895576 ~ 2896391 (-)
G2041885 NA other upstream 492769 2898987 ~ 2899388 (-)
G2042608 NA other upstream 994361 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 1132966 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1937381 4343599 ~ 4348409 (-)

Expression


Co-expression Network